CN188114
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30 Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 +RS KAGLQFPVGRI R+LKKG+Y++RVG GAP GNAARDNKK RI+PRH+ LAVRNDEEL KLL VTIA+GGV+PNI+ +LLPKK+ Sbjct: 18 TRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30 Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGR+ R+L+KG Y+ RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30 Identity = 69/105 (65.71%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGR+ R L+KG Y+QRVG GAP GNAARDNKK RI PRH+ LAVRNDEEL KLLAGVTIA GGVLPNI VLLPKK+ Sbjct: 18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30 Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGR+ R+L+KG Y+ RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++R+G GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RI+PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120 The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bpback to top |