EY665998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23 Identity = 79/225 (35.11%), Postives = 115/225 (51.11%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-----PEAAGVEVATIDSSQGREADATIISMVR 668 V IDE+ Q+ EP C+IP++ G K+ +L GD QL PVI+++KA + G+ SL ER L +L QYRM+ ++ + S Y GSL + T A L D F P + + P++ +LG EE + +GT S+ N EA V V AGV P+ I V +PY Q + + + VEVA++D+ QGRE D ++S VR Sbjct: 618 VLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ--FTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWP--VPETPMMFWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVR 828
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_XENLA (DNA2-like helicase OS=Xenopus laevis GN=dna2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22 Identity = 76/238 (31.93%), Postives = 115/238 (48.32%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEG-----------------EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 D +DEA+Q +P CL P+ R +L GD QL P++ S +A E G+ SL +R E V+ +LT QYRMN I + ++K +Y G L +S S+ +V P +K LLL+ S+ ++ L+P+ F N EA++V H + AG PS I + +PY Q++ + + L A+ VEV T+D QGR+ I+S VR Sbjct: 758 DFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVV--QLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIK--------TLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-SASAVEVNTVDKYQGRDKSVIIVSFVR 984
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22 Identity = 78/226 (34.51%), Postives = 122/226 (53.98%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVRPKPLG 683 D++ IDE +QA+EPSCLIPI++G++ I+AGD QL P +LS + +L ER + ++ L QYRMN+ I + +K Y L + +V + L+D VK I + +++ +P +++ E D + S+YN EAE V+ V L+ + + I +PY AQV+ LR ++ +EV T+D QGRE +A +IS VR K G Sbjct: 396 DVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENE---ELKKTLFERLIKKYP-EFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLD--LVKEEEIDEVDRDIIN-EIPVQFINVEGIERKDKE-SPSYYNIEEAEKVLEIVKKLVKYKIPTNVI---TPYDAQVRYLRRLFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNFG 608
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22 Identity = 76/230 (33.04%), Postives = 115/230 (50.00%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS-HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668 + IDE+ Q+ EP C++P++ G K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+ L T+ +E + +GT SF N EA V + AG+ P I + +PY Q R L + G +E+A++D+ QGRE D I+S VR Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMFFLVTQ---------GQEEIAGSGT-SFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQ----RAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVR 823
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.602e-21 Identity = 79/225 (35.11%), Postives = 112/225 (49.78%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLD-----DLPEAAGVEVATIDSSQGREADATIISMVR 668 + IDE+ QA EP CLIP++ G K+ IL GD QL PV+L +K ++ G+ SL ER +L G +LT QYRM+ ++ + S Y G L+S SH D+ P + P+ + GS E + +GT SF N EA I V + G P I + +PY Q + + +L +EVA++DS QGRE D I+S VR Sbjct: 703 ILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISL--GHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSE---LSHTDRDSQSKFPWPQPKDPMFFFNCT---GS------EEISSSGT-SFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVR 912
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (Regulator of nonsense transcripts 1 homolog OS=Schizosaccharomyces pombe GN=SPAC16C9.06c PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 4.660e-21 Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY-------VAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 V IDEA QA EP C+IP++ G K+ +L GD QL PV++++K + SL ER L G +L QYRM+ ++ + S Y G+L + T + + VD P+++P PL+ Y + +E L +GT SF N EA V + + + V P I + +PY V +Q DL +A VEVA++D+ QGRE D I+S VR Sbjct: 561 VLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIIL--GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQP----DSPLMF------YANFG---QEELSASGT-SFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKA--VEVASVDAFQGREKDFIILSCVR 771
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.499e-19 Identity = 80/231 (34.63%), Postives = 108/231 (46.75%), Query Frame = 3 Query: 12 VAIDEAAQAIEPSCLIPILQGKR-CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668 V IDE+ QA EP L+ I++G R +L GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+ ++ + S Y GSL + T + VD + KP P E L +GT SF N EA V V LI AGV P I V + Y Q R + + G VE+A++D+ QGRE D I++ VR Sbjct: 607 VLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL--GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKP-------------NKPAFFWHCSGSEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQ----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVR 817
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_MOUSE (DNA2-like helicase OS=Mus musculus GN=Dna2 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19 Identity = 72/231 (31.17%), Postives = 112/231 (48.48%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLL--LLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 D +DEA+Q +P CL P+ +R +L GD QL P++++R+A G+ SL +R V+ +LT QYRMN I S ++K Y G L S ++ ++ P +K + + P L +L+ P L+ + G N EA ++V + I AG SPS I V +PY Q++ + + L VEV T+D QGR+ ++S VR Sbjct: 758 DFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVV--QLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLL-ARSSVGMVEVNTVDKYQGRDKSLILVSFVR 985
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_HUMAN (DNA2-like helicase OS=Homo sapiens GN=DNA2 PE=1 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18 Identity = 72/241 (29.88%), Postives = 114/241 (47.30%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV-------------------DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG-VEVATIDSSQGREADATIISMVR 668 D +DEA+Q +P CL P+ +R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S ++K Y G L S ++ ++ D P++ + P+ L+T + E ++ G N EA+++V + AG SPS I + +PY Q++ + D L + G VEV T+D QGR+ ++S VR Sbjct: 757 DFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTD------KVPAPEQVEKGGVS---NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLLARSIGMVEVNTVDKYQGRDKSIVLVSFVR 983
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2_SCHPO (DNA replication ATP-dependent helicase dna2 OS=Schizosaccharomyces pombe GN=dna2 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18 Identity = 73/240 (30.42%), Postives = 116/240 (48.33%), Query Frame = 3 Query: 6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI-SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDPAGTGSFY-----------------NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668 D IDEA+Q P CL P+ ++ +L GD QL P++ + + + G+ +SL + + H + T L QYRMN+ I S +S+ +YGG+L+ S T++ L+ P L LP S SL + ++P+ + F+ N EA ++ V S + GV S+I + S Y +QV+ L + L E +E+ T+D QGR+ D +IS VR Sbjct: 1061 DYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTT-LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLI------------LPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTE---IEINTVDRYQGRDKDIILISFVR 1284 The following BLAST results are available for this feature:
BLAST of EY665998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665998 ID=EY665998; Name=EY665998; organism=Citrus sinensis; type=EST; length=901bpback to top |