EY665998

Overview
NameEY665998
Unique NameEY665998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.502e-23
Identity = 79/225 (35.11%), Postives = 115/225 (51.11%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDL-----PEAAGVEVATIDSSQGREADATIISMVR 668
            V IDE+ Q+ EP C+IP++ G K+ +L GD  QL PVI+++KA + G+  SL ER   L       +L  QYRM+  ++ + S   Y GSL +  T A  L  D  F  P  + + P++           +LG EE +  +GT S+ N  EA  V   V     AGV P+ I V +PY  Q   +   + +           VEVA++D+ QGRE D  ++S VR
Sbjct:  618 VLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ--FTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWP--VPETPMMFWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVR 828          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_XENLA (DNA2-like helicase OS=Xenopus laevis GN=dna2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 76/238 (31.93%), Postives = 115/238 (48.32%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEG-----------------EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            D   +DEA+Q  +P CL P+    R +L GD  QL P++ S +A E G+  SL +R     E V+  +LT QYRMN  I + ++K +Y G L  +S   S+ +V  P +K         LLL+        S+  ++ L+P+    F N                   EA++V H     + AG  PS I + +PY  Q++ +    + L  A+ VEV T+D  QGR+    I+S VR
Sbjct:  758 DFCIVDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVV--QLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIK--------TLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-SASAVEVNTVDKYQGRDKSVIIVSFVR 984          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 78/226 (34.51%), Postives = 122/226 (53.98%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVRPKPLG 683
            D++ IDE +QA+EPSCLIPI++G++ I+AGD  QL P +LS       +  +L ER    +    ++ L  QYRMN+ I  + +K  Y   L +  +V +  L+D   VK   I +    +++  +P   +++   E  D   + S+YN  EAE V+  V  L+   +  + I   +PY AQV+ LR   ++      +EV T+D  QGRE +A +IS VR K  G
Sbjct:  396 DVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENE---ELKKTLFERLIKKYP-EFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLD--LVKEEEIDEVDRDIIN-EIPVQFINVEGIERKDKE-SPSYYNIEEAEKVLEIVKKLVKYKIPTNVI---TPYDAQVRYLRRLFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNFG 608          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 76/230 (33.04%), Postives = 115/230 (50.00%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS-HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668
            + IDE+ Q+ EP C++P++ G K+ IL GD CQL PV++ +KA   G+  SL ER   L  G+   +L  QYRM+  ++ + S   Y GSL +        L +D P+ +P    + P+  L T+          +E +  +GT SF N  EA  V       + AG+ P  I + +PY  Q    R  L    +  G         +E+A++D+ QGRE D  I+S VR
Sbjct:  614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMFFLVTQ---------GQEEIAGSGT-SFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQ----RAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVR 823          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_DICDI (Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.602e-21
Identity = 79/225 (35.11%), Postives = 112/225 (49.78%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLD-----DLPEAAGVEVATIDSSQGREADATIISMVR 668
            + IDE+ QA EP CLIP++ G K+ IL GD  QL PV+L +K ++ G+  SL ER  +L  G    +LT QYRM+ ++  + S   Y G L+S     SH   D+    P    + P+   +     GS      E +  +GT SF N  EA I    V   +  G  P  I + +PY  Q   +   +      +L     +EVA++DS QGRE D  I+S VR
Sbjct:  703 ILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISL--GHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSE---LSHTDRDSQSKFPWPQPKDPMFFFNCT---GS------EEISSSGT-SFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVR 912          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (Regulator of nonsense transcripts 1 homolog OS=Schizosaccharomyces pombe GN=SPAC16C9.06c PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.660e-21
Identity = 79/229 (34.50%), Postives = 116/229 (50.66%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY-------VAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            V IDEA QA EP C+IP++ G K+ +L GD  QL PV++++K     +  SL ER   L  G    +L  QYRM+  ++ + S   Y G+L +  T +  +   VD P+++P      PL+       Y +     +E L  +GT SF N  EA      V + + + V P  I + +PY       V  +Q       DL +A  VEVA++D+ QGRE D  I+S VR
Sbjct:  561 VLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIIL--GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQP----DSPLMF------YANFG---QEELSASGT-SFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKA--VEVASVDAFQGREKDFIILSCVR 771          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.499e-19
Identity = 80/231 (34.63%), Postives = 108/231 (46.75%), Query Frame = 3
Query:   12 VAIDEAAQAIEPSCLIPILQGKR-CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG---------VEVATIDSSQGREADATIISMVR 668
            V IDE+ QA EP  L+ I++G R  +L GD CQL PV++ +KA   G+  SL ER   L  G+   +L  QYRM+  ++ + S   Y GSL +  T     +  VD  + KP               P         E L  +GT SF N  EA  V   V  LI AGV P  I V + Y  Q    R  + +     G         VE+A++D+ QGRE D  I++ VR
Sbjct:  607 VLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL--GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKP-------------NKPAFFWHCSGSEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQ----RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVR 817          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_MOUSE (DNA2-like helicase OS=Mus musculus GN=Dna2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 72/231 (31.17%), Postives = 112/231 (48.48%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLL--LLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            D   +DEA+Q  +P CL P+   +R +L GD  QL P++++R+A   G+  SL +R       V+  +LT QYRMN  I S ++K  Y G L   S   ++ ++  P +K   +        +  P L  +L+   P   L+       +    G   N  EA ++V    + I AG SPS I V +PY  Q++ + + L        VEV T+D  QGR+    ++S VR
Sbjct:  758 DFCIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVV--QLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLL-ARSSVGMVEVNTVDKYQGRDKSLILVSFVR 985          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2L_HUMAN (DNA2-like helicase OS=Homo sapiens GN=DNA2 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 72/241 (29.88%), Postives = 114/241 (47.30%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV-------------------DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDPAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAG-VEVATIDSSQGREADATIISMVR 668
            D   +DEA+Q  +P CL P+   +R +L GD  QL P++L+R+A   G+  SL +R       V+  +LT QYRMN  I S ++K  Y G L   S   ++ ++                   D P++   +    P+  L+T        +   E ++  G     N  EA+++V      + AG SPS I + +PY  Q++ +    D L  + G VEV T+D  QGR+    ++S VR
Sbjct:  757 DFCIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTD------KVPAPEQVEKGGVS---NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLLARSIGMVEVNTVDKYQGRDKSIVLVSFVR 983          
BLAST of EY665998 vs. ExPASy Swiss-Prot
Match: DNA2_SCHPO (DNA replication ATP-dependent helicase dna2 OS=Schizosaccharomyces pombe GN=dna2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 73/240 (30.42%), Postives = 116/240 (48.33%), Query Frame = 3
Query:    6 DLVAIDEAAQAIEPSCLIPILQGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI-SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDPAGTGSFY-----------------NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQPLRERLDDLPEAAGVEVATIDSSQGREADATIISMVR 668
            D   IDEA+Q   P CL P+   ++ +L GD  QL P++ + +  + G+ +SL +  +  H   + T L  QYRMN+ I S +S+ +YGG+L+  S T++   L+             P   L   LP  S SL    + ++P+ +  F+                 N  EA ++   V S +  GV  S+I + S Y +QV+ L + L    E   +E+ T+D  QGR+ D  +IS VR
Sbjct: 1061 DYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTT-LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLI------------LPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTE---IEINTVDRYQGRDKDIILISFVR 1284          
The following BLAST results are available for this feature:
BLAST of EY665998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RENT1_NEUCR6.502e-2335.11Regulator of nonsense transcripts 1 homolog OS=Neu... [more]
DNA2L_XENLA7.189e-2231.93DNA2-like helicase OS=Xenopus laevis GN=dna2 PE=1 ... [more]
Y104_METJA9.389e-2234.51Uncharacterized ATP-dependent helicase MJ0104 OS=M... [more]
RENT1_DROME9.389e-2233.04Regulator of nonsense transcripts 1 homolog OS=Dro... [more]
RENT1_DICDI1.602e-2135.11Regulator of nonsense transcripts 1 OS=Dictyosteli... [more]
RENT1_SCHPO4.660e-2134.50Regulator of nonsense transcripts 1 homolog OS=Sch... [more]
RENT1_CAEEL1.499e-1934.63Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
DNA2L_MOUSE9.716e-1931.17DNA2-like helicase OS=Mus musculus GN=Dna2 PE=2 SV... [more]
DNA2L_HUMAN2.165e-1829.88DNA2-like helicase OS=Homo sapiens GN=DNA2 PE=1 SV... [more]
DNA2_SCHPO6.298e-1830.42DNA replication ATP-dependent helicase dna2 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665998 ID=EY665998; Name=EY665998; organism=Citrus sinensis; type=EST; length=901bp
CCGTTGACCTAGTTGCCATTGATGAAGCAGCACAGGCAATTGAACCTTCT
TGCTTGATCCCAATATTGCAGGGAAAACGCTGTATTCTTGCCGGTGATCA
ATGCCAGCTTGCTCCGGTGATTCTTTCTAGGAAAGCTTTGGAGGGTGGGA
TTGGAGTATCCCTATTGGAGAGAGCTGCAACTTTGCATGAAGGGGTTCTT
GCTACTAAGTTAACAACCCAGTATCGTATGAATGATGCAATTGCAAGCTG
GGCCTCAAAAGAGATGTATGGTGGATCATTAATCTCGTCTTCTACTGTTG
CTAGTCATCTTCTTGTTGATACTCCATTTGTCAAGCCCACATGGATAACA
CAGTGCCCATTGTTGTTGCTTGATACAAGGCTGCCATACGGAAGTTTATC
ACTTGGTTGTGAAGAGCATCTAGATCCAGCTGGCACAGGCTCATTCTACA
ATGAAGGGGAAGCAGAAATTGTTGTGCATCATGTTTTCTCCTTGATTTGT
GCAGGTGTTAGCCCATCAGCAATTGCAGTGCAATCACCTTACGTTGCTCA
GGTACAACCCCTGAGAGAAAGGCTTGATGACCTTCCAGAGGCTGCAGGGG
TTGAGGTAGCAACTATTGATAGCTCTCAAGGCCGGGAGGCTGATGCAACG
ATTATATCAATGGTCCGGCCCAAACCTTTGGGAGCATGCCGGCTCTCCTG
TTGATAGTAACGGCGCTGAATGTTGCCGTGGTCGGCAGACGCACCCCTGC
AGAGAGAGGCGGCCCCCCTTGCCCGCCGCCTCCCACCCACACCCCTCCCC
GCCGGCGTGCCGCCCGGGTGCGCCGGCCACGCGCAGCGGGCCCGCGGCGC
ACCGACGGCACCAGTCTCAGCGAGGTGCGCTCGCCTCACACCCACCGCGC
A
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