CN188097

Overview
NameCN188097
Unique NameCN188097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC4_SCHPO (Putative pyruvate decarboxylase C3G9.11c OS=Schizosaccharomyces pombe GN=SPAC3G9.11c PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.043e-20
Identity = 68/193 (35.23%), Postives = 94/193 (48.70%), Query Frame = -3
Query:  192 YRKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGA----TLGYAQS-VPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIK-NWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSR 746
            +   L     V  ETG S F       PKGC    Q+ +GSIGWSVGA    TLG   S  P +R I  +GDGS  +T Q++S  +R G   IIF+INN GYTIE  IH     YN I   W+Y  L+     G     +  +  E+EL++  ++    K D    +EV +   D  + L+E     ++ N +
Sbjct:  380 FASFLRESDVVTTETGTSNFGILDCIFPKGCQNLSQVLWGSIGWSVGAMFGATLGIKDSDAPHRRSILIVGDGSLHLTVQEISATIRNGLTPIIFVINNKGYTIERLIHGLHAVYNDINTEWDYQNLLKGY--GAKNSRSYNIHSEKELLDLFKDEEFGKADVIQLVEVHMPVLDAPRVLIEQAKLTASLNKQ 570          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_CANGA (Pyruvate decarboxylase OS=Candida glabrata GN=PDC1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 67/193 (34.72%), Postives = 96/193 (49.74%), Query Frame = -3
Query:  192 NIYRKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLEWGSRVSAANSR 752
            N   K L     VI ETG S F   +   P       Q+ +GSIG++ GA LG A +     P+KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH     YN I+NW++  L+     G       +V    E  +  ++    K      IEV++   D    L+E     ++ N++
Sbjct:  372 NQVSKFLQEGDVVITETGTSAFGINQTPFPNNAYGISQVLWGSIGFTTGACLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGEKAGYNDIQNWDHLALLPTF--GAKDYENHRVATTGEWDKLTQDKEFNKNSKIRMIEVMLPVMDAPTSLIEQAKLTASINAK 562          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC_ASPOR (Pyruvate decarboxylase OS=Aspergillus oryzae GN=pdcA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.916e-19
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = -3
Query:  231 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPE--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKEL 734
            L  +  VI ETG + F     + P G     Q+ +GSIG+SVGA  G A +  E  +R +  +GDGSFQ+T Q+VSTM+R     IIF+I N GYTIE  IH  +  YN I+ W++  +  A    + K    KV   +EL E   N       C   +E+ + +DD    L
Sbjct:  386 LKEKDVVITETGTANFGIWDTRFPAGVTAISQVLWGSIGYSVGACQGAALAAKEQGRRTVLFVGDGSFQLTLQEVSTMIRNNLNPIIFVICNEGYTIERYIHGWEAVYNDIQPWDFLNIPVAF-GAKDKYKGYKVTTRDELRELFANEEFASAPCLQLVELHMPRDDCPASL 556          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_KLULA (Pyruvate decarboxylase OS=Kluyveromyces lactis GN=PDC1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.269e-19
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = -3
Query:  387 KMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLV 740
            + L     VI ETG S F   +   P       Q+ +GSIG++ GATLG A +     P+KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH     YN I+NW +  L+
Sbjct:  376 EFLREGDVVITETGTSAFGINQTHFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQNWQHLELL 499          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC1_KLUMA (Pyruvate decarboxylase OS=Kluyveromyces marxianus GN=PDC1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 65/162 (40.12%), Postives = 83/162 (51.23%), Query Frame = -3
Query:  309 KMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGL-----------VDAIHNGE-GKCWTTKVFCEEELIEAIE 740
            K L     V+ ETG S F   +   P       Q+ +GSIG++ GATLG A +     P+KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH     YN I++W +  L           V     GE  K  T K F E   I  IE
Sbjct:  376 KFLQEGDVVLTETGTSAFGINQTHFPNDTYGISQVLWGSIGFTGGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQSWKHLDLLPTFGAKDYEAVRVATTGEWNKLTTDKKFQENSKIRLIE 537          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC_ASPFU (Pyruvate decarboxylase OS=Aspergillus fumigatus GN=pdcA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 63/174 (36.21%), Postives = 92/174 (52.87%), Query Frame = -3
Query:  231 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPE---KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWT-TKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKEL 734
            L     VI ETG + F   + + P G     Q+ +GSIG+SVGA  G A +  E   +R I  +GDGS Q+T Q++STM+R     IIF+I N GYTIE  IH  +  YN I+ W+Y  L  A   G GK +   +V  ++++I+  EN           +E+ + ++D    L
Sbjct:  386 LKENDIVITETGTANFGIWETRFPAGVTAISQVLWGSIGYSVGACQGAALAAKEQGNRRTILFVGDGSIQLTLQEISTMIRNKLNPIIFVICNEGYTIERYIHGWEASYNDIQQWDYKSLPVAF--GAGKDYKGYRVKTKDDMIKLFENTEFASAPFLQLVELYMPREDAPSAL 557          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: DCIP_ENTCL (Indole-3-pyruvate decarboxylase OS=Enterobacter cloacae GN=ipdC PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = -3
Query:  246 VIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIH-NGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDD 716
            ++A+ G S F    L+LP    +  Q  +GSIG+++ A  G   + P +RVI   GDG+ Q+T Q++ +MLR  Q  II ++NN GYT+E  IH  +  YN I  WN+T +  A+  + + +CW  +V   E+L + +E     ++     IEV++ K D
Sbjct:  379 ILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECW--RVSEAEQLADVLEKVAHHER--LSLIEVMLPKAD 534          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: KDC_MYCPA (Alpha-keto-acid decarboxylase OS=Mycobacterium paratuberculosis GN=kdc PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.767e-18
Identity = 55/172 (31.98%), Postives = 96/172 (55.81%), Query Frame = -3
Query:  225 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKELLE 734
            L+    V+A+ G S++     +LP+G  +  Q  +GSIG+++ A LG A + P++R +  IGDG+ Q+T Q++ T  R G   +I ++NN GYT+E  IH    PYN I  W +T + +A+   E   +  + +   EL +A+  A    +D    +EV++ + +  + L+E
Sbjct:  382 LTPGNVVLADQGTSFYGMADHRLPQGVTFIGQPLWGSIGYTLPAALGAAVAHPDRRTVLLIGDGAAQLTVQELGTFAREGLSPVIVVVNNDGYTVERAIHGETAPYNDIVGWKWTEVPNALGVTEHLAFRVQTY--GELDDAL-TAAARHQDRMVLVEVVLPRLEIPRLLVE 550          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC_EMENI (Pyruvate decarboxylase OS=Emericella nidulans GN=pdcA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = -3
Query:  324 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPE---KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL 734
            L     VI ETG + F     + P G     Q+ +GSIG+SVGA  G A +  E   +R +  +GDGS Q+T Q++STM+R     IIF+I N GYTIE  IH  D  YN I+ W+  GL  A   G+G+    KV   +EL
Sbjct:  385 LKENDIVITETGTANFGIWDTRFPSGVTAISQVLWGSIGYSVGACQGAALAAKEQGNRRTVLWVGDGSLQLTLQEISTMIRNNLNPIIFVICNEGYTIERFIHGWDESYNDIQTWDIKGLPVAF-GGKGRYKGYKVTTRDEL 525          
BLAST of CN188097 vs. ExPASy Swiss-Prot
Match: PDC_ASPTN (Pyruvate decarboxylase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pdcA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.051e-17
Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  231 IYRKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPE---KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCFCFIEVIVHKDDTSKEL 749
            I  + L     VI ETG + F     + P       Q+ +GSIG+SVGA  G A +  E   +R +  +GDGS Q+T Q++STM+R     I+F+I N GYTIE  IH  D  YN I+ W+  GL   +   + K    +V   +EL +   N       C   +E+ + +DD    L
Sbjct:  381 IVGQWLKERDIVITETGTANFGIWDTRFPANVTAISQVLWGSIGYSVGACQGAALAAKEQNNRRTVLFVGDGSLQLTVQEISTMIRNNLNPIVFVICNQGYTIERFIHGWDEAYNDIQPWDIKGL-PVVFGAKDKYKGYRVKTRDELTKLFANDEFNSVPCLQLVELHMPRDDAPASL 557          
The following BLAST results are available for this feature:
BLAST of CN188097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PDC4_SCHPO5.043e-2035.23Putative pyruvate decarboxylase C3G9.11c OS=Schizo... [more]
PDC1_CANGA8.602e-2034.72Pyruvate decarboxylase OS=Candida glabrata GN=PDC1... [more]
PDC_ASPOR1.916e-1937.21Pyruvate decarboxylase OS=Aspergillus oryzae GN=pd... [more]
PDC1_KLULA3.269e-1944.35Pyruvate decarboxylase OS=Kluyveromyces lactis GN=... [more]
PDC1_KLUMA7.282e-1940.12Pyruvate decarboxylase OS=Kluyveromyces marxianus ... [more]
PDC_ASPFU1.242e-1836.21Pyruvate decarboxylase OS=Aspergillus fumigatus GN... [more]
DCIP_ENTCL1.242e-1835.00Indole-3-pyruvate decarboxylase OS=Enterobacter cl... [more]
KDC_MYCPA2.767e-1831.98Alpha-keto-acid decarboxylase OS=Mycobacterium par... [more]
PDC_EMENI1.051e-1741.55Pyruvate decarboxylase OS=Emericella nidulans GN=p... [more]
PDC_ASPTN1.051e-1734.27Pyruvate decarboxylase OS=Aspergillus terreus (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005H23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188097 ID=CN188097; Name=CN188097; organism=Citrus sinensis; type=EST; length=754bp
AGCAGCAAGAGGATTTAGTAGATATTAAATTTTAAAATGAATTTCCTTTA
GAAACCAGCAAATAGTTCAAAATACCCAAAACTTACTAAAGTAACCACAG
AAAAGACATGCGCTCATTTAATTTGGCTATAAATGGTAGTAGAGTGCAAT
TTGCAGTATGAGCCGCCTCATATCTACTGAGGATTTGGTGGGCGGCTATT
CGCAGCGGAGACCCTGGAGCCCCATTCCAAAAGCTCTTTGCTTGTATCAT
CCTTGTGAACAATTACTTCAATGAAGCAAAAGCAATCCTTCTTGGGTCCA
GTAGCGTTCTCAATGGCTTCGATGAGCTCCTCCTCGCAGAAGACCTTGGT
TGTCCAGCACTTGCCTTCGCCATTGTGGATTGCATCAACCAACCCGGTGT
AGTTCCAGTTCTTGATCACATTGTAAGGTCCATCATGGATCTCAACTTCA
ATGGTGTAACCACCATTGTTAATTAGGAAGATTATAGTCTTCTGCCCACA
TCGCAGCATTGTTGACACATCTTGTGCAGTTACCTGGAAGCTACCATCAC
CGATGCAAGCAATTACACGCTTCTCTGGCACAGACTGTGCATATCCAAGA
GTAGCACCAACAGACCAACCAATTGATCCATATTGCATTTGGAACTCATA
CCCGCATCCCTTAGGCAATTTCAGTTTCTGGCAGTTAAACCAAGAGTCCC
CTGTCTCAGCAATCACAGCAGTTTCACTAGACAGCATCTTTCTGTATATG
TTGG
back to top