CN188095

Overview
NameCN188095
Unique NameCN188095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.625e-31
Identity = 73/183 (39.89%), Postives = 108/183 (59.02%), Query Frame = -1
Query:  232 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 780
            SGSTA   +I    +   N GDSR VL R GQ    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+V+ACDGIWD +S++EL +FV  +L     L  +C  V D CL   +     DNM+++LV F     N P  +++
Sbjct:  130 SGSTAVGVMISPTHIYFINCGDSRAVLCRNGQVCFSTQDHKPCNPMEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCFA----NAPKVSDE 304          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.977e-31
Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = -1
Query:  232 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELC-DDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 780
            SGSTA   +I  +     N GDSR +L R  +    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE   +DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P A ++
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = -1
Query:  232 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELC-DDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 780
            SGSTA   +I  +     N GDSR +L R  +    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE   +DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P A ++
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = -1
Query:  232 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELC-DDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQ 780
            SGSTA   +I  +     N GDSR +L R  +    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE   +DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P A ++
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.702e-30
Identity = 83/195 (42.56%), Postives = 118/195 (60.51%), Query Frame = -1
Query:  268 PHSDFHGPT-SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-ALNLSKDHKP--DLEVEKDRILKAGGF---IQVGRVNGSLNLARAI-------GDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE-TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 807
            P + + GP   GSTACV +IR  Q++V + GDSRCVLSR+G  A++LS DHKP    E E++R+  AGG    ++  +V G+  +           GD  FK NK L  EKQ++  +PDI   ++ DD EFLVIA  G+W C+ S ++V ++ D+L+ E  +L VICE+V +  LA        +N T+ILVQFK
Sbjct:  156 PQATYTGPAYEGSTACVVVIRGNQMIVGHVGDSRCVLSRQGGLAIDLSFDHKPCTRTESERERVQNAGGRSLGLRCEQVMGNYVVKEQWVLGDFGGGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG------ENTTVILVQFK 344          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.791e-30
Identity = 74/195 (37.95%), Postives = 115/195 (58.97%), Query Frame = -1
Query:  199 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQPPSDQQSKLAS 783
            +SG+TA  A+I DK +++ANAGDSR VL ++G+A+ LSKDHKP+   E+ RI K GG I  G +NG L++ARA+GD   K  K        ++  P++  I L ++DE+L++ CDG+WD +SSQ  V  VR +L          + +    L  ++    CDN+T+++V F   S   P   E P S ++  +++
Sbjct:  164 SSGTTALTALILDKTMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGTKGSLCP---LSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPERCSQALVKEALQRNS----CDNLTVVVVCF---SPEAPPRIEIPKSHKRRSISA 348          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.951e-30
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = -1
Query:  271 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELC-DDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 780
            SGSTA   +I  +     N GDSR +L R  +    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE   +DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICF 291          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.951e-30
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = -1
Query:  271 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELC-DDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 780
            SGSTA   +I  +     N GDSR +L R  +    ++DHKP   +EK+RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE   +DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F
Sbjct:  125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICF 291          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.441e-29
Identity = 72/186 (38.71%), Postives = 108/186 (58.06%), Query Frame = -1
Query:  226 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQPP 783
            +SG+TA  A+I  +QL+VANAGD R VL RKG A+ +S+DH+P  + E +RI + GG+I+ G +NG L++ RA+GD + K+ +     +  + A P+     L +DDEFL+I CDGIWD +SSQ  V  VR  L          E+        +   +  DN+T+I++ F      G  ++EQ P
Sbjct:  176 SSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYIEDGYLNGVLSVTRALGDWDMKMPQ---GSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDD----PERCARELAMEAKRLQTFDNLTVIVICFGSELGGGSPSSEQAP 354          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.209e-29
Identity = 67/170 (39.41%), Postives = 103/170 (60.59%), Query Frame = -1
Query:  271 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 780
            SG+TA  A++  + L+VANAGD R VL  +G+A+ +S+DHKP    EK RI  +GG++  G +NG LN+ARAIGD   +  K+      + +A P++    L ++DEFL+I CDGIWD   SQ  VDF R +L         C+++ D  +   +G    DN++++++ F
Sbjct:  167 SGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKACDGLGPL-SAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFARRKLQEHNDPVTCCKELVDEAIKRKSG----DNLSVVVICF 331          
The following BLAST results are available for this feature:
BLAST of CN188095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
PPM1B_RAT2.625e-3139.89Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_BOVIN9.977e-3138.59Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PPM1A_RABIT1.702e-3038.59Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_HUMAN1.702e-3038.59Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
P2C17_ORYSJ1.702e-3042.56Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
P2C47_ARATH3.791e-3037.95Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
PPM1A_RAT4.951e-3040.35Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_MOUSE4.951e-3040.35Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
P2C02_ORYSJ1.441e-2938.71Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C57_ORYSJ3.209e-2939.41Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005H22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188095 ID=CN188095; Name=CN188095; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTAGGATATCTATCCCATTAAAATGAAAAAGCTTAAATAT
TTACAACCAAATCATGAGAATCGTTTTCCGAATGTAAAATCAGGGACCAT
GGTTCTGAGCTCAGCAGTGTTTCAGACAGTAGAAAATGAGTACCATTTAG
TCAGTGCAAAGAGTGCTACAGCTAATTCGATTCAGTCCCTGCTGAACTGC
TGGCTAACTTGGATTGTTGGTCAGATGGTGGCTGCTCAGCCGCAGAAGGA
CCATTATTAGAAAGAATTTTAAACTGAACCAAGATCATGGTCATGTTGTC
GCATCCTTCACCACCAGCTGATGGAGCCAAGCACCGATCGAATACTTTCT
CGCAAATGACTGATAGTTTTGTTTCGTTGGTTAATTGATCCCTGACAAAA
TCGACAAGTTCTTGACTTGAAAGGCAATCCCAAATCCCATCACAAGCTAT
GACAAGAAACTCATCGTCATCACAAAGTTCAATAGTACTTATATCAGGAT
TGGCAGTCACAATCTGTTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAAC
TCCACATCTCCAATAGCTCTCGCCAAATTTAAACTTCCATTAACACGTCC
AACTTGTATAAAACCACCAGCTTTGAGAATTCTATCTTTCTCAACCTCAA
GATCAGGCTTATGGTCTTTAGATAGATTAAGTGCCTGGCCCTTCCTCGAT
AACACACAACGAGAATCACCAGCATTTGCAACCACGAGTTGCTTGTCTCT
AATGATTGCTACGCAAGCTGTACTTCCAGAAGTTGGTCCATGAAAATCTG
AGTGAGGACCCTCCTCCGATGCCCAATCGTCAAAATGATCATT
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