CN188095

Overview
NameCN188095
Unique NameCN188095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 65/179 (36.31%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  277 HGPTSGSTACVAIIRDKQ------LVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILV 792
            H    G TA VA  R ++      L  ANAGD+R VL R G+A+ LS DHK     E  R+ + GG +   R+NG L + RA+GD            K++V+A+P  +   + +  DEF +IACDG+WD +S QE VDFVR+ ++       + E    R           DN+T I+V
Sbjct:  160 HNDICGCTAAVAFFRYEKNRTRRVLYTANAGDARIVLCRDGKAIRLSYDHKGSDANESRRVTQLGGLMVQNRINGVLAVTRALGDTYL---------KELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVEFALKRL--------STDNITCIVV 321          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PPM1K_BOVIN (Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 69/178 (38.76%), Postives = 101/178 (56.74%), Query Frame = -1
Query:  271 TSGSTACVAIIRDK-QLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGR--VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 783
            TSG+TA VA++RD  +LV+A+ GDSR +L RKG+ + L+ DH P+ + EK+RI K GGF+    +G+  VNG L + R++GD++ K +         V A P+   I+L   DD FLV+  DGI   ++SQE+ DFV            + E+      A   G E  DN T ++V F
Sbjct:  185 TSGTTATVALLRDGIELVIASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSG--------VIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQ------AIQYGTE--DNTTAVVVPF 346          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  391 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVR 777
            GSTA VA++   ++VVAN+GDSR VL R G  + LS DHKPD   E +RI  AGG   +    RV G L ++RAIGD            K  VT+ P+++  E  DDDE L++A DG+WD ++++   + VR
Sbjct:  213 GSTAVVAVVGPNRVVVANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIKAAGGRVIYWDGARVLGVLAMSRAIGDGYL---------KPYVTSEPEVTVTERADDDECLILASDGLWDVVTNEMACEVVR 335          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  403 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ----VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELV 789
            G  SG+    A+I+D++++V+N GD R VL R G A  L+ DHKP  + EK+RI   GG++       RV G L ++R+IGD            K+ V A P+   +EL  D EFLV+A DG+WD +S+QE V
Sbjct:  207 GVVSGACCVTAVIQDQEMIVSNLGDCRAVLCRAGVAEALTDDHKPGRDDEKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHL---------KKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAV 330          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.067e-20
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  382 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 783
            T GSTA VA++    ++V+N GDSR VL R   ++ LS DHKPD E E  RI KAGG +   Q  RV+G L ++R+IGD            +  V  +P+++ +    +DE L++A DG+WD +S+QE  DF R ++
Sbjct:  324 TVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIGDQYL---------EPFVIPDPEVTFMPRAREDECLILASDGLWDVMSNQEACDFARRRI 451          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.352e-19
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = -1
Query:  391 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVR 777
            GSTA V+++  ++++VAN GDSR VL R G+A+ LS DHKPD   E DRI  AGG   +    RV G L ++RAIGD            K  V + P+++  +  + D+FL++A DG+WD +S++     VR
Sbjct:  221 GSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYL---------KPYVISRPEVTVTDRANGDDFLILASDGLWDVVSNETACSVVR 343          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 66/177 (37.29%), Postives = 101/177 (57.06%), Query Frame = -1
Query:  268 GSTACVAI-IRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDD-EFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 777
            GSTA  AI I  ++LVVAN GDSR V+ + G A  LS DH+P++  EKD I   GGF+      V RV+G L +ARA GD   K++  L +E  +        T+E+ DDD EFL++A DG+W  +S+QE VD ++     +     + E+   R        +  D++++++V+F+
Sbjct:  133 GSTAVTAILINCQKLVVANVGDSRAVICQNGVAKPLSVDHEPNM--EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMH--LSSEPYV--------TVEIIDDDAEFLILASDGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVAR--------KSSDDISVVVVKFQ 289          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 75/208 (36.06%), Postives = 103/208 (49.52%), Query Frame = -1
Query:  178 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTN----ETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSAAEQPPSDQQSKLASSSAGTES 777
            GSTA VA++  + +VVAN GDSR VL R G A+ LS DHKPD   E +RI  AGG   F    RV G L ++RAIGD            K  V  +P++  +E  D +DEFL++A DG+WD +S++   + VR  L +    E   S     +  R    S+ G+   N            +  PSAA    SD++S      A  E+
Sbjct:  191 GSTAVVAVLGPRHVVVANCGDSRAVLCRGGAAIPLSCDHKPDRPDELERIHAAGGRVIFWDGARVFGMLAMSRAIGDSYL---------KPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVRACLRSSGRRERNRSSPTSNLSPR--QSSSSGDEAPN------------DGAPSAAAGSESDEESAAEEDKACAEA 375          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.011e-19
Identity = 65/172 (37.79%), Postives = 93/172 (54.07%), Query Frame = -1
Query:  271 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 777
            GSTA  A++    L VAN GDSR V+S+ G+A+ LS+DHKP+   E+ RI  AGG +      RV G L ++RA G      N+ L   K  V A P+I    + +D E LV+A DG+WD + ++E V   + +   E+    + E  + R  A        DN+T I+VQF
Sbjct:  203 GSTASTAVLVGGHLYVANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFG------NRLL---KPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSA--------DNITCIVVQF 357          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.932e-19
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  388 SGSTACVAIIR-----------------DKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRD 780
            SG TA V ++R                  ++L  AN GDSR VL R G ++ L+ DHK    +E  R+ +AGG I   RVNG L + R++GD  F           +V  +P  +++E+  +D+FL++ACDG+WD +  Q+  + ++D
Sbjct:  112 SGCTAAVCVLRWELPDSVSDDSMDLAQHQRKLYTANVGDSRIVLFRNGNSIRLTYDHKASDTLEMQRVEQAGGLIMKSRVNGMLAVTRSLGDKFF---------DSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKD 250          
The following BLAST results are available for this feature:
BLAST of CN188095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
PP2C1_SCHPO3.557e-2036.31Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
PPM1K_BOVIN4.645e-2038.76Protein phosphatase 1K, mitochondrial OS=Bos tauru... [more]
P2C49_ORYSJ6.067e-2043.18Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C14_ARATH6.067e-2041.35Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]
P2C07_ARATH6.067e-2040.88Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C78_ARATH1.352e-1940.91Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C39_ARATH2.305e-1937.29Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C30_ORYSJ2.305e-1936.06Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C13_ORYSJ3.011e-1937.79Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
PP2C1_YEAST3.932e-1933.78Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005H22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188095 ID=CN188095; Name=CN188095; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTAGGATATCTATCCCATTAAAATGAAAAAGCTTAAATAT
TTACAACCAAATCATGAGAATCGTTTTCCGAATGTAAAATCAGGGACCAT
GGTTCTGAGCTCAGCAGTGTTTCAGACAGTAGAAAATGAGTACCATTTAG
TCAGTGCAAAGAGTGCTACAGCTAATTCGATTCAGTCCCTGCTGAACTGC
TGGCTAACTTGGATTGTTGGTCAGATGGTGGCTGCTCAGCCGCAGAAGGA
CCATTATTAGAAAGAATTTTAAACTGAACCAAGATCATGGTCATGTTGTC
GCATCCTTCACCACCAGCTGATGGAGCCAAGCACCGATCGAATACTTTCT
CGCAAATGACTGATAGTTTTGTTTCGTTGGTTAATTGATCCCTGACAAAA
TCGACAAGTTCTTGACTTGAAAGGCAATCCCAAATCCCATCACAAGCTAT
GACAAGAAACTCATCGTCATCACAAAGTTCAATAGTACTTATATCAGGAT
TGGCAGTCACAATCTGTTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAAC
TCCACATCTCCAATAGCTCTCGCCAAATTTAAACTTCCATTAACACGTCC
AACTTGTATAAAACCACCAGCTTTGAGAATTCTATCTTTCTCAACCTCAA
GATCAGGCTTATGGTCTTTAGATAGATTAAGTGCCTGGCCCTTCCTCGAT
AACACACAACGAGAATCACCAGCATTTGCAACCACGAGTTGCTTGTCTCT
AATGATTGCTACGCAAGCTGTACTTCCAGAAGTTGGTCCATGAAAATCTG
AGTGAGGACCCTCCTCCGATGCCCAATCGTCAAAATGATCATT
back to top