CN188095

Overview
NameCN188095
Unique NameCN188095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = -1
Query:  412 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ 777
            GSTA VA++ + ++VVAN GDSR VL R G  + LS DHKPD   E +RI  AGG   F +  RV G L ++R+IGD            K  VTA P+++     D DE L++A DG+WD +S++
Sbjct:  192 GSTAVVAVVEESRVVVANCGDSRAVLCRGGAPVQLSSDHKPDRPDELERIEAAGGRVIFWEGARVLGVLAMSRSIGDAYL---------KPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNE 307          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 66/175 (37.71%), Postives = 93/175 (53.14%), Query Frame = -1
Query:  271 GSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 777
            GSTA   I+ D K+LVVAN GDSR V+S+ G A  LS DH+P    EK  I   GGF+      V RV+G L +ARA GD   KL+         +++ PDI+   + D  EF++ A DGIW  LS+QE VD ++           + E+   R        +  D+++ I+V+F
Sbjct:  127 GSTAVTGILIDGKKLVVANVGDSRAVMSKNGVAHQLSVDHEP--SKEKKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLH---------LSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEAISR--------KSKDDISCIVVKF 282          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  373 GSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE 777
            GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++   + +E V+F+   L +E
Sbjct:  194 GSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDE 326          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = -1
Query:  274 GSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL------TNETKLSVIC--EKVFDRCLAPSAGGEGCDNMTMILVQ 777
            GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++   + +E V+F+   L      T E K +V    E   +R    +      DN+T+++V+
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKPAVDARYEAACNRLANKAVQRGSADNVTVMVVR 389          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = -1
Query:  274 GSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL------TNETKLSVIC--EKVFDRCLAPSAGGEGCDNMTMILVQ 777
            GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++   + +E V+F+   L      T E K +V    E   +R    +      DN+T+++V+
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDDKIQTREGKPAVDARYEAACNRLANKAVQRGSADNVTVMVVR 389          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C05_ORYSJ (Probable protein phosphatase 2C 5 OS=Oryza sativa subsp. japonica GN=Os01g0552300 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.760e-19
Identity = 61/170 (35.88%), Postives = 91/170 (53.53%), Query Frame = -1
Query:  349 SGSTACVAIIRDKQLVVANAGDSRC-VLSRKGQALNLSKDHKP------DLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEK-------------------QIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICE 780
            SG+TA    +R+  LVV++ GDS   V+SR G+   ++  H+P       LE E  RI  AGG+I  GR+ G ++++RA GD+ FK  K+    K                    ++ ++PD+S +EL  D EF+++A DG+WD + S E V  VRDQL     + V CE
Sbjct:  157 SGATATAMFLRNDVLVVSHIGDSCLQVVSRGGRPQAVTNFHRPYGNKKASLE-EVKRIRAAGGWIVDGRICGEISVSRAFGDIRFKTRKNEMLVKGVKEGRWTEKFISRINFKGDLIVSSPDVSLVELGPDVEFVLLATDGLWDYIKSSEAVALVRDQLRQHGDVQVACE 325          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.760e-19
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  373 GSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE 777
            GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++   + +E V+F+   L +E
Sbjct:  216 GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDE 348          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = -1
Query:  391 GPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVR 789
            GP  GSTA  AI+ D K + VAN GDSR V+  +G A  L+ DH+P    E+ RI K GGF+      V RVNG L +ARA GD   K +         +++ PD+  + +    EF+++A DG+W  + +QE VD V+
Sbjct:  159 GP-GGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAH---------LSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVK 287          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.549e-18
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = -1
Query:  259 SEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ----VGRVN-GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILS 819
            S+     D+H    G TA  +++ + +L VAN GDSR +L R G    LSK H      E++R++  GG I+      RV    L + R+IGD + K     PA    VTA P+IS   L  DDEFLV+A DG+WD ++ +E++  +RD +    K   +C K   R    +A     DN+T+I+V  + +S
Sbjct:  480 SKRVSQKDWH---PGCTAIASLLVENKLFVANVGDSRAILCRAGHPFALSKAHLATCIDERNRVIGEGGRIEWLVDTWRVAPAGLQVTRSIGDDDLK-----PA----VTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIRDTV----KEPSMCSK---RLATEAAARGSGDNITVIVVFLRPVS 652          
BLAST of CN188095 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.549e-18
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = -1
Query:  382 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 783
            T GSTA VA++    +VV+N GDSR VL R  +A+ LS DHKPD E E  RI  AGG +   Q  RV G L ++R+IGD            K  V   P+++ +    +DE L++A DG+WD +++QE+ +  R ++
Sbjct:  324 TVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYL---------KPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRI 451          
The following BLAST results are available for this feature:
BLAST of CN188095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
P2C68_ORYSJ5.136e-1944.00Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C58_ARATH5.136e-1937.71Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
ILKAP_BOVIN5.136e-1939.72Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_RAT6.708e-1935.71Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE6.708e-1935.71Integrin-linked kinase-associated serine/threonine... [more]
P2C05_ORYSJ8.760e-1935.88Probable protein phosphatase 2C 5 OS=Oryza sativa ... [more]
ILKAP_HUMAN8.760e-1939.72Integrin-linked kinase-associated serine/threonine... [more]
P2C44_ORYSJ1.144e-1840.29Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C31_ARATH2.549e-1835.42Protein kinase and PP2C-like domain-containing pro... [more]
P2C16_ARATH2.549e-1840.15Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005H22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188095 ID=CN188095; Name=CN188095; organism=Citrus sinensis; type=EST; length=843bp
TTTTTTTTTTTTAGGATATCTATCCCATTAAAATGAAAAAGCTTAAATAT
TTACAACCAAATCATGAGAATCGTTTTCCGAATGTAAAATCAGGGACCAT
GGTTCTGAGCTCAGCAGTGTTTCAGACAGTAGAAAATGAGTACCATTTAG
TCAGTGCAAAGAGTGCTACAGCTAATTCGATTCAGTCCCTGCTGAACTGC
TGGCTAACTTGGATTGTTGGTCAGATGGTGGCTGCTCAGCCGCAGAAGGA
CCATTATTAGAAAGAATTTTAAACTGAACCAAGATCATGGTCATGTTGTC
GCATCCTTCACCACCAGCTGATGGAGCCAAGCACCGATCGAATACTTTCT
CGCAAATGACTGATAGTTTTGTTTCGTTGGTTAATTGATCCCTGACAAAA
TCGACAAGTTCTTGACTTGAAAGGCAATCCCAAATCCCATCACAAGCTAT
GACAAGAAACTCATCGTCATCACAAAGTTCAATAGTACTTATATCAGGAT
TGGCAGTCACAATCTGTTTTTCAGCAGGCAAACTTTTGTTTAGCTTGAAC
TCCACATCTCCAATAGCTCTCGCCAAATTTAAACTTCCATTAACACGTCC
AACTTGTATAAAACCACCAGCTTTGAGAATTCTATCTTTCTCAACCTCAA
GATCAGGCTTATGGTCTTTAGATAGATTAAGTGCCTGGCCCTTCCTCGAT
AACACACAACGAGAATCACCAGCATTTGCAACCACGAGTTGCTTGTCTCT
AATGATTGCTACGCAAGCTGTACTTCCAGAAGTTGGTCCATGAAAATCTG
AGTGAGGACCCTCCTCCGATGCCCAATCGTCAAAATGATCATT
back to top