CK939231

Overview
NameCK939231
Unique NameCK939231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  179 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNS 520
            KRL ++++ L ++P + +   P  N I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +     M  PN        ICL   D     W+P++ V++ILT + S + D +P +
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 122          
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 47/163 (28.83%), Postives = 76/163 (46.63%), Query Frame = 2
Query:  164 STPARKRLMRDFKRLQQDPPAGISGAP----QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARMFSENKREYNRRVRE 589
            S    +RL ++   L    P   S +      +  + +   +I GP DTP+  G F+  + F +DYP+ PP V        S  F+PN+Y DG +CL IL       + +W+P       +L S+QSL+   +P  N P    S      +++ REY+  +R+
Sbjct: 4543 SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 4705          
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  179 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSPIYD-VAAILTSIQSLLCDPNP--NSPANSEAA---------RMFSEN 559
            K++  D+K L+ D P  IS    ++ + L  AVI G + TP+  G F   +QF + YP+ PP V + S     +PN+Y  G +CL +L       + +W P    +  +L SIQ+L+ +  P  N P   ++A         +++SEN
Sbjct:  274 KKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSEN 421          
The following BLAST results are available for this feature:
BLAST of CK939231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC34_ARATH2.194e-1131.09Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
BIRC6_HUMAN2.865e-1128.83Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBC26_ARATH4.888e-1131.08Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939231 ID=CK939231; Name=CK939231; organism=Citrus sinensis; type=EST; length=816bp
GGGGCTCTCTCTCTCTTTTGTTTCTCTGATCAAATTGAGTACCATGGAAT
TCTTTCTCTGATACCGCCTGCTTTTCGATTGTTTCCCGAGAAAAATCTCG
CTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCT
CGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTA
AGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGAC
AACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGACACCCC
ATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTATC
CAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAAT
ATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGGAG
TCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTT
GTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTT
AGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCA
GAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAA
AAATAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGG
TGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGG
ATGGTTGGCCTCTTATTGTTAATTTCTCGTCTTTGGGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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