CK939231

Overview
NameCK939231
Unique NameCK939231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   LQ+DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   E A  +  ++ +YNR  RE
Sbjct:    2 ALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.488e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.277e-35
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L QDPPA  S  P    +  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.277e-35
Identity = 66/139 (47.48%), Postives = 93/139 (66.91%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L QDPPA  S  P    +  W A I GP+D+P+ GG F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTARE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.179e-35
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CK939231 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.179e-35
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 2 
Query:  173 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 589
            A KR+ ++   L +DPPA  S  P  + +  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
The following BLAST results are available for this feature:
BLAST of CK939231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UB2D4_HUMAN7.488e-3648.92Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D2_XENLA7.488e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT7.488e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE7.488e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN7.488e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN7.488e-3648.92Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT1.277e-3547.48Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.277e-3547.48Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2D3_RAT2.179e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.179e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_E01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939231 ID=CK939231; Name=CK939231; organism=Citrus sinensis; type=EST; length=816bp
GGGGCTCTCTCTCTCTTTTGTTTCTCTGATCAAATTGAGTACCATGGAAT
TCTTTCTCTGATACCGCCTGCTTTTCGATTGTTTCCCGAGAAAAATCTCG
CTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCT
CGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTA
AGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGAC
AACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGACACCCC
ATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTATC
CAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAAT
ATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGGAG
TCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTT
GTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTT
AGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCA
GAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAA
AAATAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGG
TGGTGTGAACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGG
ATGGTTGGCCTCTTATTGTTAATTTCTCGTCTTTGGGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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