CK939221

Overview
NameCK939221
Unique NameCK939221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 88/246 (35.77%), Postives = 128/246 (52.03%), Query Frame = 3
Query:  111 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAA-LYHQVVIRA 824
            G+  S +  +A +AEFIAT LF++  V + +   K  S+      G+  +A A    +F  V   A +SGGH+NPAVTLGL +   +++   LFY + QCLG+     ++K          +  G +V  HG   G     G+  EII TF LVYTV+ +A D K+ +    + + AP+ IGF V    LA  P +G  +NPARS G A+       +  +WI+W GP +G  LA  +Y  V I A
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK---------FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---ASGDFSQNWIYWAGPLIGGALAGFIYGDVFITA 239          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 88/241 (36.51%), Postives = 134/241 (55.60%), Query Frame = 3
Query:  138 RAGIAEFIATFLFLYISVLTVMGVVK------SNTKCSTVG---IQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 818
            RA +AEF++TF+F++ +  +++ + K      ++   +T G   +  +A AF   +FA V     +SGGH+NPAVT G  +  +++  RA++Y + Q LGAI    +++    G    G   RLA G   V       +GL  EII TF LVY V+S   D KR +    + I APL IG  V    L   P +G  +NPAR+ G A++  +   W DHWI+WVGPF+G+ LAAL ++ ++
Sbjct:   24 RATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFA--LFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVG--FRLASGVGAV-------NGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 88/239 (36.82%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  111 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 806
            G+  S S  +A ++EFIAT LF++  V + +   K  S+      G+  IA A    +F  V   A ISGGH+NPAVTLGL +   ++L    FY + QCLG+I    ++           +  G +V  HG + G    +G+  EI+ TF LVYTV+ +A D K+ +    +   AP+ IGF V    LA  P +G  +NPARS G A++          WI+WVGP VG  LA L +
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLV---------FVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDLSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.155e-29
Identity = 83/239 (34.73%), Postives = 124/239 (51.88%), Query Frame = 3
Query:  108 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 815
            PGEL      +A +AEFI+T +F++    + M   K       +  G+   + A    +F  V   A ISGGH+NPAVT G F+   +SL +AL Y V Q LG++    ++K   G    G  +  A V A      + +  E++ TF LVYTV+ +A D K+      + + AP+ IGF V    LA     G  +NPA S G A++      W++HW++WVGP  GA +AAL + ++
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAM-----NAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGV---WENHWVYWVGPLAGAAIAALVYDII 237          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.155e-29
Identity = 81/235 (34.47%), Postives = 119/235 (50.64%), Query Frame = 3
Query:  114 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 818
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +  G +       EI  T   V  +F+  D +R+ R      S  L +GF++ L HL  +  TG G+NPARS   AI+    R + +HW++WVGP +G GL +L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLG----SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.815e-29
Identity = 79/233 (33.91%), Postives = 127/233 (54.51%), Query Frame = 3
Query:  138 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVV 815
            +AG+AEFI+TF+F++    + +   K  ++   +  G+   + A    +F  V   A ISGGH+NPAVT G F+   ++L R + Y++ Q LG+I  + ++               ++V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I AP+ IGF V    L     TG  +NPA S G A++      W +HW++W GP +G G+A L ++V+
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLV----------FVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.676e-29
Identity = 85/239 (35.56%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  111 GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 806
            G+  S +  +A ++EFIAT LF++  V + +   K  S+      G+  +A A    +F  V   A ISGGH+NPAVTLGL +   +++    FY + QCLG+I    ++           +  G +V  HG   G    +G+  EI+ TF LVYTV+ +A D K+ +    +   AP+ IGF V    LA  P +G  +NPARS G A++      +   WI+WVGP VG  LA L +
Sbjct:   10 GDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLV---------FVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVV---SGDFSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.190e-29
Identity = 79/235 (33.62%), Postives = 119/235 (50.64%), Query Frame = 3
Query:  114 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 818
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   N +    + G     EI  T   V  +F+  D +R+ +      S  L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP +G GL +L +  ++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLG----SVALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTG---NFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.397e-28
Identity = 84/235 (35.74%), Postives = 124/235 (52.77%), Query Frame = 3
Query:  138 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLG------AEIIGTFVLVYTVFSAT-DAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 818
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVT G  +  ++SL RA+ Y V Q LGA+    ++          RLA G  +   G+    G+G       E + TF L+Y  ++   D KR     HV   APL +GF +    LA  P  G G+NPAR  G A++  +   W  HW++W+GPF+GAGLA L ++ ++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLL----------RLATG-GMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLV 242          
BLAST of CK939221 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.824e-28
Identity = 81/229 (35.37%), Postives = 122/229 (53.28%), Query Frame = 3
Query:  138 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRSARDSHVPISAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 818
            RA I+EF+AT +F++ +  +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+T G  L  +LSL RALFY + Q LGA+    +++   G  +    A     +A G      +  E   TF L+Y  ++   D KR     HV   APL +GF +    LA  P  G G+NPAR  G A++  +   W  HW++W+GPFVGAGLA L ++ ++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFA-----LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLV 243          
The following BLAST results are available for this feature:
BLAST of CK939221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
TIP_ANTMA1.650e-2935.77Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP31_ARATH1.650e-2936.51Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP23_ARATH1.650e-2936.82Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP12_MAIZE2.155e-2934.73Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_CAVPO2.155e-2934.47Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP1_MEDTR2.815e-2933.91Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP22_ARATH3.676e-2935.56Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
MIP_HUMAN8.190e-2933.62Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP31_MAIZE1.397e-2835.74Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ORYSJ1.824e-2835.37Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_F02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939221 ID=CK939221; Name=CK939221; organism=Citrus sinensis; type=EST; length=919bp
GGGGACTGGNNNCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGACGGCG
GCTCAGACCCAAGATGGGAAGGACTACGTTGAGCCCCCACCGGCGCCGCT
CTTTGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGGTATAG
CCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGACAGTG
ATGGGCGTCGTCAAGTCCAATACCAAGTGCTCAACCGTCGGCATTCAAGG
GATTGCATGGGCCTTCGGTGGCATGATCTTCGCGCTCGTTTACTGCACAG
CTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTC
TTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCA
GTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCATGGGTG
CCGGCCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGC
TACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCT
TGTCTACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACT
CTCATGTTCCTATTTCGGCTCCTCTGCCAATTGGGTTCGCTGTGTTTTTG
GTTCACTTGGCTACCATCCCAATTACCGGAACTGGCATCAACCCAGCGAG
GAGTCTTGGAGCTGCAATCATCTACAACAAGGACCGCGGTTGGGATGACC
ACTGGATTTTCTGGGTGGGACCATTCGTTGGAGCTGGACTTGCAGCTTTG
TACCACCAAGTCGTGATCAGAGCCATTCCCTTCAAATGAAGCTGATCGCT
TCATCGACGTTCGTGATTGCACCTGCATTTGTTTATGGCTGTTGCTGGTT
TGCTTATGTGTATTATAAA
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