CN188060

Overview
NameCN188060
Unique NameCN188060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF_LYMST (Fructose-bisphosphate aldolase (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.233e-20
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = -3
Query:  425 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEE 634
            A  TV AL RT+PAAV  + FLSGGQSEE+AT NLNA+NQ   +KPW L+FS+GRALQ S LKAW GK+E
Sbjct:   31 ARATVTALNRTVPAAVAGITFLSGGQSEEDATINLNAINQFPGRKPWPLTFSYGRALQASVLKAWGGKDE 100          

HSP 2 Score: 21.557 bits (44), Expect = 2.233e-20
Identity = 11/19 (57.89%), Postives = 12/19 (63.16%), Query Frame = -2
Query:  636 PNMVTPGSEAP-KVTPDVI 689
            PNMVT G   P K TP+ I
Sbjct:   12 PNMVTAGQGCPKKYTPEDI 30          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFA (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa GN=XF_0826 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 50/97 (51.55%), Postives = 65/97 (67.01%), Query Frame = -3
Query:  347 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWA-GKEENVQKAQAAFLVRCKANSEATLGTYKG 634
            AE TV  L+ T+PA +P +VFLSGGQ++ ++T +LNAMNQL    PW LSFS+GRA+QQ+ LK W+   + N  KAQ     R K N  A LG +KG
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQL-DPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKWKG 334          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF1_XANAC (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas axonopodis pv. citri GN=XAC3344 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  347 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWA-GKEENVQKAQAAFLVRCKANSEATLGTYKG 634
            AE TV  L+ T+PA +P +VFLSGGQ++E++T +LN M+QL    PW LSFS+GRA+QQ+ LK WA     N  KAQ     R K N  A LG +KG
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQL-GNLPWPLSFSYGRAMQQAALKLWAKDMTGNFAKAQQVIYERAKENGLAALGKWKG 334          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFT (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1845 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  347 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWA-GKEENVQKAQAAFLVRCKANSEATLGTYKG 634
            AE TV  L+ T+PA +P +VFLSGGQ++ ++T +LNAMNQ     PW LSFS+GRA+QQ+ LK W+   + N  KAQ     R K N  A LG +KG
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQF-DPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKWKG 334          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF1_XANCP (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas campestris pv. campestris GN=XCC3185 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  347 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWA-GKEENVQKAQAAFLVRCKANSEATLGTYKG 634
            AE TV  L+ T+PA +P +VFLSGGQ++E++T +LN M+QL    PW LSFS+GRA+QQ+ LK W+     N  KAQ     R K N  A LG +KG
Sbjct:  239 AESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQL-GNLPWPLSFSYGRAMQQAALKLWSKDMTGNYAKAQQIIYERAKENGLAALGKWKG 334          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  290 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 634
            AE+T++ L    P  VP ++FLSGGQSE E+T NLNAMNQ  +  PW +SFS+ RAL  + LK W      VQ  + A   R KANS+A  G Y    + G+ AA+ ++ K   Y
Sbjct:  263 AEYTLKMLAARAPP-VPGIMFLSGGQSELESTLNLNAMNQ--SPNPWHVSFSYARALTNTVLKTWQASPRTVQAPRLAAQAR-KANSDAQQGKYDATTE-GKEAAQGMYEKGKGY 372          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  329 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFLVRCKANSEATLGTYKGDAQLGE 634
            A++ ++ L R     VP ++ LSGGQSE EAT NLNAMNQ  +  PW +SFS+ RALQ + LK W   +ENV+    A     K+NS A LG Y G+ +  E
Sbjct:  285 ADYPLKLLHRRRGPVVPGIMVLSGGQSEVEATLNLNAMNQ--SPNPWHVSFSYARALQNTCLKTWVEGQENVKAQDFAC---AKSNSLAQLGKYTGEGESEE 381          
BLAST of CN188060 vs. ExPASy Swiss-Prot
Match: ALF_ENCCU (Fructose-bisphosphate aldolase OS=Encephalitozoon cuniculi GN=ECU01_0240 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  395 AEHTVRALQRTMPAAVPAVVFLSGGQSEEEATRNLNAMNQLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVQKAQAAFL 634
            A  T+RAL  T+P  +P +VFLSGG   E+A   LNA+N  +  + WSLSFSF RAL    L+ W G + N+++AQ   L
Sbjct:  241 ATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLETWRGDDSNIEEAQKILL 320          
The following BLAST results are available for this feature:
BLAST of CN188060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ALF_LYMST2.233e-2067.14Fructose-bisphosphate aldolase (Fragment) OS=Lymna... [more]
ALF1_XYLFA8.357e-1951.55Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANAC1.425e-1851.55Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XYLFT2.431e-1850.52Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANCP4.147e-1850.52Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALFC_CHLRE5.070e-1644.35Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALFC_SPIOL6.621e-1646.08Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALF_ENCCU4.745e-1446.25Fructose-bisphosphate aldolase OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005H01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188060 ID=CN188060; Name=CN188060; organism=Citrus sinensis; type=EST; length=699bp
CCCCTTTTTTTAGCACAGAAACATTATCAATTATGTGACAAAATCACAGA
AATTCAGTGCCATTAGGGGAAAGGAAAAAAAAAGAAAAACAAAAACAAAA
GCATAAACAGTTTTCAGTTTAGTTTTGATCAAAACCACTCAAACCGAAGT
TCCCAAGCTTTTTATTGCTCCACCTAAATATGAAAAAGCTCTAAAACTAT
GAATGAGAATGGGCCAACCTAATGTTCATACCGCCATTTACTCTCATAAA
GTTCATAAAGCACAACACCCAAAGCTTCAACTGTGCTTAGTATTTGTAGT
CCTTGACATGGAGAGACTCTGCGGCACCTTCACCAAGCTGGGCATCACCC
TTGTAAGTACCGAGGGTAGCCTCAGAGTTGGCCTTGCACCTGACAAGGAA
AGCAGCCTGGGCCTTCTGCACATTCTCTTCCTTTCCAGCCCATGCCTTGA
GAGTGCTCTGCTGAAGTGCACGTCCAAAGGAGAAGGAAAGTGACCATGGC
TTCTTCGTCTTGAGCTGGTTCATGGCATTAAGGTTGCGGGTAGCCTCCTC
CTCACTCTGCCCACCAGACAAGAACACAACAGCAGGAACTGCTGCAGGCA
TAGTGCGTTGCAGGGCCCGGACAGTGTGTTCAGCAAATCACGTCCGGTGT
AACTTTGGGAGCTTCAGATCCAGGGGTCACCATGTTGGGGCTTCAAAAG
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