CN188058

Overview
NameCN188058
Unique NameCN188058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  206 FQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 667
            FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T   +I    F  ++  LQ W+ +F++ DRD SG I S EL++AL  +G+ +SP    LLV+++  T     A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  122 FQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMGYNLSPQFTQLLVSRY-CTRSAIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 275          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: SORCN_PONAB (Sorcin OS=Pongo abelii GN=SRI PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 57/168 (33.93%), Postives = 92/168 (54.76%), Query Frame = -1
Query:  194 YFVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 682
            YF A   +A +D  G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++GF +SP  ++ +  ++  T GK   I +D++I CC+ ++ LT+ F+ RDT   G   F Y++F+  V+
Sbjct:   38 YFAA---VAGQD--GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-STNGK---ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: SORCN_HUMAN (Sorcin OS=Homo sapiens GN=SRI PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 57/168 (33.93%), Postives = 92/168 (54.76%), Query Frame = -1
Query:  194 YFVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 682
            YF A   +A +D  G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++GF +SP  ++ +  ++  T GK   I +D++I CC+ ++ LT+ F+ RDT   G   F Y++F+  V+
Sbjct:   38 YFAA---VAGQD--GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-STNGK---ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: GRAN_PONAB (Grancalcin OS=Pongo abelii GN=GCA PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 49/150 (32.67%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  206 GLIDDKELQGALSSYNQS-----FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 640
            G +D +ELQ  L+    S     FSL T R+++         K+G   F +++ +L  W+  F  VD+D SG ++ +ELR+A+  +G+ +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F++RD    GSA F Y++F+
Sbjct:   67 GEVDAEELQRCLTQSGISGTYSPFSLETCRIMIAMLDRDYTGKMGFNAFKELWSALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG----RIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFL 212          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: GRAN_HUMAN (Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 48/150 (32.00%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  206 GLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 640
            G +D +ELQ  L+          FSL T R+++      +  K+G   F +++ +L  W+  F  VD+D SG ++ +ELR+A+  +G+ +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F++RD    GSA F Y++F+
Sbjct:   66 GEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG----RIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFL 211          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: SORCN_MOUSE (Sorcin OS=Mus musculus GN=Sri PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 54/168 (32.14%), Postives = 92/168 (54.76%), Query Frame = -1
Query:  194 YFVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 682
            YF A   +A +D  G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++GF +SP  ++ +  ++  +G     I +D++I CC+ ++ LT+ F+ RD+   G   F+Y++F+  V+
Sbjct:   38 YFAA---VAGQD--GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSG----KITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVM 196          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: SORCN_CRIGR (Sorcin OS=Cricetulus griseus GN=SRI PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = -1
Query:  194 GLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 640
            G ID  ELQ  L+        + F+L T RL++       +  +G  EF +++  L  WR  F   D DRSG +D  EL++AL ++GF ++P  ++ +  ++  +G     I +D++I CC+ ++ LT+ F+ RD+   G   F+Y++F+  V+
Sbjct:   47 GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSG----KITFDDYIACCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQCVM 196          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: GRAN_MOUSE (Grancalcin OS=Mus musculus GN=Gca PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 52/165 (31.52%), Postives = 92/165 (55.76%), Query Frame = -1
Query:  206 SYFVACFQLADRDNSGLIDDKELQGALSSYNQS-----FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 685
            +YF A   +A +D  G +D +ELQ  L+    S     FSL T R+++         K+G  EF +++ +L  W+  F  +D+D+SG ++ +EL +A+  +G+ +SP  L  +V ++ K G     I +D+++ CC+ ++ LT+ F+ RD    G   F YE+F+
Sbjct:   59 TYFTA---VAGQD--GEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNG----RIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFL 214          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CANA_DROME (Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = -1
Query:  206 DRDNSGLIDDKELQG------ALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 655
            D+ N  LI D    G      A+      FS    R ++       + K+G +EF  +   +  W+A+F+  D + +G++   +LREAL S G+ ++  VL++L  ++    GK   I +D+FI C + +K   + FKERDT  + +ATFT E ++
Sbjct:  670 DQSNKRLIGDNPADGGPVTANAIVDETHGFSKDVCRSMVAMLDADKSGKLGFEEFETLLSEIAKWKAIFKVYDVENTGRVSGFQLREALNSAGYHLNNRVLNVLGHRYGSRDGK---IAFDDFIMCAVKIKTYIDIFKERDTEKNETATFTLEEWI 822          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CANB_DROME (Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = -1
Query:  206 NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 595
            +  FS   VR ++       + ++G +EF  +   +  WRA+F+  D  R+G ID   LR AL S G+ ++  +L+ L  ++   G +   I +D+F+ C + V+   E F+ERDT  S +A F  ++++
Sbjct:  793 SDGFSKDAVRSMVAMLDKDRSGRLGFEEFEALLTDIAKWRAVFKLYDTRRTGSIDGFHLRGALNSAGYHLNNRLLNALAHRY---GSREGQIPFDDFLMCAIKVRTFIEMFRERDTDNSDTAFFNLDDWL 919          
The following BLAST results are available for this feature:
BLAST of CN188058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PEF1_RAT6.894e-2136.77Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
SORCN_PONAB4.940e-1933.93Sorcin OS=Pongo abelii GN=SRI PE=2 SV=1[more]
SORCN_HUMAN4.940e-1933.93Sorcin OS=Homo sapiens GN=SRI PE=1 SV=1[more]
GRAN_PONAB1.437e-1832.67Grancalcin OS=Pongo abelii GN=GCA PE=2 SV=1[more]
GRAN_HUMAN1.437e-1832.00Grancalcin OS=Homo sapiens GN=GCA PE=1 SV=2[more]
SORCN_MOUSE1.877e-1832.14Sorcin OS=Mus musculus GN=Sri PE=1 SV=1[more]
SORCN_CRIGR1.877e-1831.17Sorcin OS=Cricetulus griseus GN=SRI PE=1 SV=1[more]
GRAN_MOUSE4.182e-1831.52Grancalcin OS=Mus musculus GN=Gca PE=2 SV=1[more]
CANA_DROME1.645e-1430.77Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1... [more]
CANB_DROME4.479e-1230.00Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188058 ID=CN188058; Name=CN188058; organism=Citrus sinensis; type=EST; length=700bp
TTTTTTTTTTTTTTTTTAGTAATAAACAAACCATAACACTGTTTTTTATT
TAACTAAGAGGTAAACTACAGCCACGCCCCTTATCCACATAAAAACATCG
AAAACACCTAAAACGTTACATCACATTCACACCAAATCCACGATTCAAAG
TCATTAAACAACAAATTTTAAAAACCTAAGCAATGAGGAATGGCAGAACA
GCCAGCATGAAATTCTCGTAAGTGAAAGTTGCAGATCCAGAGTACGTAGT
ATCCCTCTCCTTAAATTTCTCCGTTAACCCCTTAACCGTGAGACAGCACT
CGATGAAGTTATCATATTCAATGGCCTTGCTTTTGCCACCAGTTTTGTCA
AACTTAGTGACAAGCAAGTCCAATACCACGGGTGAAACCGCAAAACCTAG
ACTCATAAGAGCCTCCCGCAACTCATTCGAATCAATCTTTCCACTCCTGT
CCCTGTCCACTTTCTCAAACATGGCCCTCCAGTTTTGAAGACTGTGAAAC
ACTTGGATGAACTCCTTAGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAA
TGTGTACATAAGCAGACGAACGGTTCTCAAGCTGAAGCTCTGATTGTAAG
AAGACAAGGCTCCTTGCAACTCCTTATCGTCGATGAGGCCGCTGTTGTCC
CGGTCGGCCAACTGGAAGCACGCCACGAAATAACTTTCCTTCTATTGATC
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