CN188058

Overview
NameCN188058
Unique NameCN188058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN2_CHICK (Calpain-2 catalytic subunit OS=Gallus gallus GN=CAPN2 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/130 (26.92%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  206 NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 595
            +  FS+ T ++++    N  + K+G KEF  ++  +Q ++ ++ ++D DRSG ++S E+R AL + GF +S  +  ++V +F     +   I++DN + C + ++ L + F++ DT  +G+      N++
Sbjct:  569 SDGFSIETCKIMVDLLDNDGSGKLGLKEFHTLWTKIQKYQKIYREIDVDRSGTMNSYEMRRALEAAGFKLSCQLHQIIVARF---ADEDLIIDFDNCVRCLIRLETLYKMFRKLDTEKTGTIELNLINWL 695          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN1_RABIT (Calpain-1 catalytic subunit (Fragment) OS=Oryctolagus cuniculus GN=CAPN1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = -1
Query:  224 FVACF-QLADRDNSGLIDDKELQGALSSYN--------QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 679
            F A F QLA  D    I  +ELQ  L+           + FS+ + R ++         K+G  EF  +++ ++N+ A+F K D D+SG + + E+R A+ S GF ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  135 FKALFRQLAGEDLE--ISVRELQTILNRITSKHKDLRTKGFSMESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLAIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 290          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN1_PIG (Calpain-1 catalytic subunit OS=Sus scrofa GN=CAPN1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 35/123 (28.46%), Postives = 70/123 (56.91%), Query Frame = -1
Query:  224 QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 592
            + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG + + E+R A+ S GF ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  583 KGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLFELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN1_MACFA (Calpain-1 catalytic subunit OS=Macaca fascicularis GN=CAPN1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = -1
Query:  224 FVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 679
            F A F QLA  D    I  KEL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG + + E+R A+ S GF ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  547 FKALFRQLAGEDME--ISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN1_HUMAN (Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = -1
Query:  224 FVACF-QLADRDNSGLIDDKELQGALSSY--------NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 679
            F A F QLA  D    I  KEL+  L+           + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG + + E+R A+ S GF ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  547 FKALFRQLAGEDME--ISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN1_PONAB (Calpain-1 catalytic subunit OS=Pongo abelii GN=CAPN1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 35/123 (28.46%), Postives = 70/123 (56.91%), Query Frame = -1
Query:  224 QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATF 592
            + FSL + R ++         K+G  EF  +++ ++N+ ++F K D D+SG + + E+R A+ S GF ++  + +L++T++ +      A+++DNF+ C + ++ +   FK  DT   G  TF
Sbjct:  583 KGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRYSE---PDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTF 702          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CAN11_RAT (Calpain 11 OS=Rattus norvegicus GN=Capn11 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 43/149 (28.86%), Postives = 81/149 (54.36%), Query Frame = -1
Query:  233 LADRDNS-GLIDDKELQGALSSYNQSF-----SLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGS 661
            LA+RD+   + D ++L   +SS  +SF     SL   R ++      ++ K+G  EF  ++  ++ W  +F++ D+DRSG ++S E+R A+   G  ++  V +++V ++      +  +++DNFI C L +K +   F   DT  +GS
Sbjct:  556 LANRDSQVDMYDLQKLLNKMSSKVKSFKSKGFSLDVCRRMVNLMDKDDSGKLGLHEFHILWKKIKKWMEIFKECDQDRSGNLNSYEMRLAIEKAGIRMNNRVTEVVVARY---ADANMIVDFDNFINCFLRLKAMFAFFLSMDTKKTGS 701          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CPNS2_HUMAN (Calpain small subunit 2 OS=Homo sapiens GN=CAPNS2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 32/117 (27.35%), Postives = 66/117 (56.41%), Query Frame = -1
Query:  236 FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSG 586
            FSL T R ++    +    K+G +EF  ++++++ W+ ++++ DRD SG + S++LR AL + GF ++  +  ++V ++    G    ++++NFI C + +  +   FK  D    G
Sbjct:  119 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGALQAAGFQLNEQLYQMIVRRYANEDGD---MDFNNFISCLVRLDAMFRAFKSLDRDRDG 232          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CPNS1_BOVIN (Calpain small subunit 1 OS=Bos taurus GN=CAPNS1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 32/127 (25.20%), Postives = 70/127 (55.12%), Query Frame = -1
Query:  206 FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 586
            F + T R ++    +    K+G +EF  ++++++ W+A++++ D DRSG I S+EL  A  + GF ++  + ++++ ++   GG    +++DNFI C + +  +   FK  D   +G      + ++
Sbjct:  134 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAVYKQFDVDRSGTIGSSELPGAFEAAGFRLNEHLYNMIIRRYSDEGGN---MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWL 257          
The following BLAST results are available for this feature:
BLAST of CN188058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CAN2_CHICK4.479e-1226.92Calpain-2 catalytic subunit OS=Gallus gallus GN=CA... [more]
CAN1_RABIT1.303e-1129.19Calpain-1 catalytic subunit (Fragment) OS=Oryctola... [more]
CAN1_PIG1.702e-1128.46Calpain-1 catalytic subunit OS=Sus scrofa GN=CAPN1... [more]
CAN1_MACFA1.702e-1129.19Calpain-1 catalytic subunit OS=Macaca fascicularis... [more]
CAN1_HUMAN1.702e-1129.19Calpain-1 catalytic subunit OS=Homo sapiens GN=CAP... [more]
CAN1_PONAB2.223e-1128.46Calpain-1 catalytic subunit OS=Pongo abelii GN=CAP... [more]
CAN11_RAT4.952e-1128.86Calpain 11 OS=Rattus norvegicus GN=Capn11 PE=2 SV=... [more]
CPNS2_HUMAN6.467e-1127.35Calpain small subunit 2 OS=Homo sapiens GN=CAPNS2 ... [more]
CPNS1_BOVIN6.467e-1125.20Calpain small subunit 1 OS=Bos taurus GN=CAPNS1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188058 ID=CN188058; Name=CN188058; organism=Citrus sinensis; type=EST; length=700bp
TTTTTTTTTTTTTTTTTAGTAATAAACAAACCATAACACTGTTTTTTATT
TAACTAAGAGGTAAACTACAGCCACGCCCCTTATCCACATAAAAACATCG
AAAACACCTAAAACGTTACATCACATTCACACCAAATCCACGATTCAAAG
TCATTAAACAACAAATTTTAAAAACCTAAGCAATGAGGAATGGCAGAACA
GCCAGCATGAAATTCTCGTAAGTGAAAGTTGCAGATCCAGAGTACGTAGT
ATCCCTCTCCTTAAATTTCTCCGTTAACCCCTTAACCGTGAGACAGCACT
CGATGAAGTTATCATATTCAATGGCCTTGCTTTTGCCACCAGTTTTGTCA
AACTTAGTGACAAGCAAGTCCAATACCACGGGTGAAACCGCAAAACCTAG
ACTCATAAGAGCCTCCCGCAACTCATTCGAATCAATCTTTCCACTCCTGT
CCCTGTCCACTTTCTCAAACATGGCCCTCCAGTTTTGAAGACTGTGAAAC
ACTTGGATGAACTCCTTAGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAA
TGTGTACATAAGCAGACGAACGGTTCTCAAGCTGAAGCTCTGATTGTAAG
AAGACAAGGCTCCTTGCAACTCCTTATCGTCGATGAGGCCGCTGTTGTCC
CGGTCGGCCAACTGGAAGCACGCCACGAAATAACTTTCCTTCTATTGATC
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