CN188055

Overview
NameCN188055
Unique NameCN188055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 43/121 (35.54%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   85 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAF 447
            M KV+ +QEVA+HN  ++ W++I  KVY+V+ F ++HPGGDE+++    +DAT+ F D+GHSD A  +++  +IG++D +S           + V++ E+    +  L +++ +L+LG+A+
Sbjct:    1 MPKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTSERVS------VEKVSTSENQSKGSGTLVVILAILMLGVAY 115          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            +EVAK N+  + WLVI G+VY+VT FL +HPGG+E+LL     DA++ FEDVGHS  AREM+++Y+IG+I  S +  +     P     S  DT  +     +L  +  + + F +RY++
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPENGSKDP-----SKNDTCKSCWAYWILPIIGAVLLGFLYRYYT 140          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYF 462
            +EVAK N+ ++ W+VI G+VY++T FL +HPGG+E+LL     DAT+ FEDVGHS  AREM+++Y+IG++  S +  K     P +  N+   +  A   + ++  +L   I F +R+F
Sbjct:   26 EEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPKGDDKDPSK--NNSCQSSWAYWFVPIVGAIL---IGFLYRHF 139          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            +EVAK N+  + WLVI G+VY+VT FL +HPGG+E+LL     DA++ FEDVGHS  AREM+++Y+IG+I  S +  +     P     S  DT  +     +L  +  + + F +RY++
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPESGSKDP-----SKNDTCKSCWAYWILPIIGAVLLGFLYRYYT 140          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYF 462
            +EVAK N  ++ W+VI G+VY++T FL +HPGG+E+LL     DAT+ FEDVGHS  AREM+++Y+IG++  + +  K     P +  N+   +  A  I+ ++  +L   I F +R+F
Sbjct:   26 EEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPKDGDKDPSK--NNSCQSSWAYWIVPIVGAIL---IGFLYRHF 139          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 39/118 (33.05%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   94 VHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAF 447
            ++  +EVA+H   DD W++++GKVYN++ ++++HPGG+E++L     DAT+ F+D+GHSD A E++EK +IG +  + +   +      Q+ ++ ED+G    ++ + V +   G+ +
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKIVEAKH----AQSFSTEEDSGINFPLIAVGVFLAAFGVYY 123          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI---DSSSVPAKRKYT 351
            EVAK+N +D  W +I   VY+VT FL +HPGG+E+L+    KDAT+ FEDVGHS  AREMM++Y +GE+   + S+VP K + T
Sbjct:   13 EVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSNVPEKSEPT 96          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   85 MAKVHDFQ--EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI--DSSSVPAKR---KYTPPQQAVNSPEDTGSAAQILQLLV 420
            MA++  F   ++++H  +D  +L I GKVY+ T F+++HPGG+E+L+    +DAT+ FEDVGHSD AR++M K  +GE   DSS  P  +     TP       P D+GS   +L L V
Sbjct:    1 MAELKSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSPSSSTPRPIPAAEPSDSGSLQYVLALAV 119          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS 393
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+E+L      DAT++FEDVGHS  AREM + + IGE+     P   K  PP+  + + + + S
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNK--PPETLITTIDSSSS 108          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   85 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILG 438
            M+    +Q+VA+HN + D ++VI  KVY++T F+++HPGG+E+LL    +D+T+ FEDVGHSD ARE +E   +G +   +   K K  P   ++     TG+A  +   L  +L+LG
Sbjct:    1 MSAEFTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTLKRQAGDPKPK-APLPSSLAPAAQTGTATGLGIGLYAVLVLG 117          
The following BLAST results are available for this feature:
BLAST of CN188055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CYB5_YEAST1.322e-1935.54Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5B_PONAB2.945e-1940.83Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_MOUSE3.846e-1940.34Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_HUMAN3.846e-1940.83Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT5.023e-1940.34Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_CANTR6.560e-1933.05Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5_MUSDO8.567e-1952.38Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_MORAP3.256e-1841.18Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
CYB5_HUMAN1.237e-1741.58Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_NEUCR1.616e-1738.98Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005G22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188055 ID=CN188055; Name=CN188055; organism=Citrus sinensis; type=EST; length=707bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATTATTCCGATT
CTGCGTGAGCAGTACCTGAAATAGCCCGAAAAGAATGGCCAAGGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
GGGTGATGAACTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAC
AGATTCTACAGCTCCTGGTACCAATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCTAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGATTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCACGATTTGATTAGATACTAATCTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAG
AAGTTATACTGAAGCACTAATACAGTGAAATTGAACGCAAGAAAAAAAAA
AAAAAAA
back to top