CN188055

Overview
NameCN188055
Unique NameCN188055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 44/128 (34.38%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            +  K +  +E+ KHNN    WL++  KVY++T FLE+HPGG+E+L      DAT++FEDVGHS  ARE+ + + IGE+       + K T P +++ +  D+  +     L+  +  L +A  +  ++
Sbjct:    7 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD---RSKITKPSESIITTIDSNPSWWTNWLIPAISALFVALIYHLYT 131          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 46/123 (37.40%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI----DSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYF 462
            +EV KHN RDD ++V+  KVY+++ FL+ HPGG+E+L+    +DA+  FEDVGHS+ A+E++EK++IG +    D   +P     T    A  S  D+    +    L  ++++   FAFR +
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNLLRTEDGPQLP-----TTGAAAGGSGYDSSQPVKPAMWLFVLVMVVAYFAFRKY 126          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVP 333
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+E+L      DAT+DFEDVGHS  ARE+ + Y IGE+     P
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGELHPDDRP 86          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 43/124 (34.68%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYF 462
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+E+L      DAT++FEDVGHS  ARE+ + + IGE+       + K + P + + +  D+ S+     ++  +  L +A  +R +
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD---RSKLSKPMETLITTVDSNSSWWTNWVIPAISALIVALMYRLY 130          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 42/128 (32.81%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            +  K +  +E+ KHN+    WL++  KVY++T FLEDHPGG+E+L      DAT++FED+GHS  ARE+ + + IGE+       + K   P + + +  D+ S+     ++  +  + +A  +R ++
Sbjct:    7 KAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHPDD---RSKIAKPVETLITTVDSNSSWWTNWVIPAISAVVVALMYRIYT 131          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI--DSSSVPAKRKYTPPQQAVNSPEDTGS 393
            +  K +  +E+ KHNN    WL++  KVY++T FLE+HPGG+E+L      DAT++FEDVGHS  ARE+ + + IGE+  D  S  AK    P +  + + E   S
Sbjct:    7 KAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKIAK----PSETLITTVESNSS 108          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPM 426
            +K +   EV +HNN D  W+++ G VY+ T FL+DHPGG + +L     D T++FE + HSD A++M+E Y IGE+ ++   +    + P  +V+   DT     I +++ PM
Sbjct:  517 SKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTTCYNSDSSSSNP--SVHGSSDTIPLTPIKEVITPM 626          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPM 426
            +K +   EV +HNN D  W+++ G VY+ T FL+DHPGG + +L     D T++FE + HSD A++M+E Y IGE+ ++   +    + P  +V+   DT     I +++ PM
Sbjct:  513 SKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTTCYNSDSSSSNP--SVHGRSDTIPLTPIKEVITPM 622          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPM 426
            AK++   EV KHN+ D CW+++ G +Y+ T FL DHPGG + +L     D T++FE + HSD A++M+E Y IGE+ ++       Y+    + N+     SA  +  LL P+
Sbjct:  542 AKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGELITTG------YSSDSSSPNNSVHGSSA--VFSLLAPI 645          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSA 396
            + +  +EV KHNN    W+++  ++Y++T FL++HPGG+E+L      DAT++FEDVGHS  AR + E + IGE+     P  +K  P +  + + +   S+
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPKLQK--PAETLITTVQSNSSS 114          
The following BLAST results are available for this feature:
BLAST of CN188055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CYB5_BOVIN1.616e-1734.38Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB52_SCHPO2.756e-1737.40Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_ALOSE4.701e-1748.15Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_RABIT8.019e-1734.68Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_HORSE8.019e-1732.81Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_PIG1.047e-1641.51Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
NIA2_SOYBN1.368e-1636.28Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_SOYBN3.047e-1636.28Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA2_ARATH5.198e-1637.17Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
CYB5_CHICK5.198e-1636.27Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188055 ID=CN188055; Name=CN188055; organism=Citrus sinensis; type=EST; length=707bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATTATTCCGATT
CTGCGTGAGCAGTACCTGAAATAGCCCGAAAAGAATGGCCAAGGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
GGGTGATGAACTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAC
AGATTCTACAGCTCCTGGTACCAATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCTAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGATTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCACGATTTGATTAGATACTAATCTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAG
AAGTTATACTGAAGCACTAATACAGTGAAATTGAACGCAAGAAAAAAAAA
AAAAAAA
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