CN188055

Overview
NameCN188055
Unique NameCN188055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA_ASPNG (Nitrate reductase [NADPH] OS=Aspergillus niger GN=niaD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQ 360
            ++ D QE  K+++ +  W +++G+VY+ T FLE HPGG + ++++   D +++F  + H+ +A+ MM  YHIG +D +S+ A +    PQ
Sbjct:  515 RIIDLQEFKKNSSDEKPWFIVNGEVYDGTAFLEGHPGGAQSIISSAGIDVSEEFLAI-HTQTAKAMMPDYHIGTMDKASLEALKNDNAPQ 603          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   85 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            + K     EV KH +++  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+ +++ Y IGE+
Sbjct:  248 VGKEFTMSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPMLILGIAFAFRYFS 465
            EVAKHN  DDCW+VI+G VY++T FL +HPGG +++     KD T  FE +     A  +++KY      +G +  S  P      PP     + ED     Q+  LL P+  +   + F Y +
Sbjct:   95 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNVIDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDFEYLA 212          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAQILQLLVPML 429
            EV +H ++D  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HS  AR ++E Y +GE+    +     Y+P     +S  D  +  +   ++VP L
Sbjct:  522 EVRRHASKDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSAKARGLLEMYRVGEL----IVTGNDYSPQ----SSNADLAAIVEAPAVVVPRL 619          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NIA_FUSOX (Nitrate reductase [NADPH] OS=Fusarium oxysporum GN=NIA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSS 327
            +E+  H+  ++ W V+ G+VY+ TP+L  HPGG   +  A  +DAT++F  + HS++A+ M+  YHIG +D  S
Sbjct:  552 EELKAHSGEEEPWFVVKGEVYDGTPYLSGHPGGAASIFGAAGQDATEEFMAI-HSENAKAMLPTYHIGTLDEES 624          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NB5R4_BOVIN (Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D TD F+ V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTDLFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NB5R4_RAT (Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=Cyb5r4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D TD F +V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NB5R4_HUMAN (Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D T+ F+ V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CN188055 vs. ExPASy Swiss-Prot
Match: NB5R4_MOUSE (Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDELLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN ++DCW+ I G VYNV+P++E HPGG++ L+ A   D TD F +V    +   M+++  +G +
Sbjct:   60 EELKKHNKKEDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
The following BLAST results are available for this feature:
BLAST of CN188055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
NIA_ASPNG7.767e-1234.44Nitrate reductase [NADPH] OS=Aspergillus niger GN=... [more]
NIA1_MAIZE1.325e-1138.96Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
CYB2_YEAST1.325e-1134.68Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
NIA7_HORVU1.730e-1133.64Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA_FUSOX2.260e-1139.19Nitrate reductase [NADPH] OS=Fusarium oxysporum GN... [more]
NB5R4_BOVIN2.260e-1141.43Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 ... [more]
NB5R4_RAT2.951e-1141.43Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=... [more]
NB5R4_HUMAN6.575e-1140.00Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R... [more]
NB5R4_MOUSE8.587e-1140.00Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005G22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188055 ID=CN188055; Name=CN188055; organism=Citrus sinensis; type=EST; length=707bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATTATTCCGATT
CTGCGTGAGCAGTACCTGAAATAGCCCGAAAAGAATGGCCAAGGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
GGGTGATGAACTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAC
AGATTCTACAGCTCCTGGTACCAATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCTAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGATTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCACGATTTGATTAGATACTAATCTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAG
AAGTTATACTGAAGCACTAATACAGTGAAATTGAACGCAAGAAAAAAAAA
AAAAAAA
back to top