CK939147

Overview
NameCK939147
Unique NameCK939147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOQU (Photosystem II reaction center protein L OS=Ipomoea quamoclit GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOPU (Photosystem II reaction center protein L OS=Ipomoea purpurea GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOOB (Photosystem II reaction center protein L OS=Ipomoea obscura GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOCC (Photosystem II reaction center protein L OS=Ipomoea coccinea GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOBA (Photosystem II reaction center protein L OS=Ipomoea batatas GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOAQ (Photosystem II reaction center protein L OS=Ipomoea aquatica GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_IPOAL (Photosystem II reaction center protein L OS=Ipomoea alba GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_ILLPA (Photosystem II reaction center protein L OS=Illicium parviflorum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_ILLOL (Photosystem II reaction center protein L OS=Illicium oligandrum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
[Close]
BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_HYDCA (Photosystem II reaction center protein L OS=Hydrastis canadensis GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
The following BLAST results are available for this feature:
BLAST of CK939147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PSBL_IPOQU6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOPU6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOOB6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOCC6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOBA6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOAQ6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_IPOAL6.890e-15100.00Photosystem II reaction center protein L OS=Ipomoe... [more]
PSBL_ILLPA6.890e-15100.00Photosystem II reaction center protein L OS=Illici... [more]
PSBL_ILLOL6.890e-15100.00Photosystem II reaction center protein L OS=Illici... [more]
PSBL_HYDCA6.890e-15100.00Photosystem II reaction center protein L OS=Hydras... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939147 ID=CK939147; Name=CK939147; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTGGGGTCAATATCAGCAATGCAGTTCATCCAACGCTAAACC
TAATCGGAATTAGAGAGCTATGACACAATCAAACCCAAACGAACAAAATG
TTGAATTGAACCGTACCAGTCTCTACTGGGGGTTATTGCTCATTTTTGTA
CTTGCTGTTTTATTTTCCAATTACTTCTTCAATTAAGAGAAGAAAAGAGA
ATAGTATAAGAATCCAAAATAGTAGGAATTCTCTTATCCCATTCGGAAGA
AGCGCATCTTATAATTATCTATGACTGTTTATGTCTCTAGCGTGACCACT
TGCAAAAATGTGCAAAAATGTGGAGGGAAGCGGGATAAATGGCCGATACT
ACTGGAAGGATTCCCCTTTGGATAATAGGAACTGTAACTGGTATTCTTGT
GATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCCGGATTAGGTT
CGTCCTTGTAGTAATCGAATGAACTGCGTTATAGACATAAAAGCGTAAGA
ACTCAAGGTACCCTGTCGTTCCCGTGCTTTGTCTGATTCGAGGGGTAGGG
CCAGGGCCCCTTGAGTTCTTAATAAACATAATATTTTGGTTTGCTCGTAT
AAATGGAAAAAACGGATCGCTTTTTCCGATGCTTCAAAAAAATCCATTTC
ATTTTTTTCTGATTTCTGATGATTTTT
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