CK939147 | Citrus Genome Database

Overview


Name	CK939147
Unique Name	CK939147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_HORVU (Photosystem II reaction center protein L OS=Hordeum vulgare GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_HORSP (Photosystem II reaction center protein L OS=Hordeum spontaneum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_HORJU (Photosystem II reaction center protein L OS=Hordeum jubatum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_HELAN (Photosystem II reaction center protein L OS=Helianthus annuus GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_GUIAB (Photosystem II reaction center protein L OS=Guizotia abyssinica GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_GOSHI (Photosystem II reaction center protein L OS=Gossypium hirsutum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_GOSBA (Photosystem II reaction center protein L OS=Gossypium barbadense GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_FAGEA (Photosystem II reaction center protein L OS=Fagopyrum esculentum subsp. ancestrale GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_DRIWI (Photosystem II reaction center protein L OS=Drimys winteri GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_DRIGR (Photosystem II reaction center protein L OS=Drimys granadensis GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of CK939147 vs. ExPASy Swiss-Prot

BLAST of CK939147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181


Match Name	E-value	Identity	Description
PSBL_HORVU	6.890e-15	100.00	Photosystem II reaction center protein L OS=Hordeu...	[more]
PSBL_HORSP	6.890e-15	100.00	Photosystem II reaction center protein L OS=Hordeu...	[more]
PSBL_HORJU	6.890e-15	100.00	Photosystem II reaction center protein L OS=Hordeu...	[more]
PSBL_HELAN	6.890e-15	100.00	Photosystem II reaction center protein L OS=Helian...	[more]
PSBL_GUIAB	6.890e-15	100.00	Photosystem II reaction center protein L OS=Guizot...	[more]
PSBL_GOSHI	6.890e-15	100.00	Photosystem II reaction center protein L OS=Gossyp...	[more]
PSBL_GOSBA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Gossyp...	[more]
PSBL_FAGEA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Fagopy...	[more]
PSBL_DRIWI	6.890e-15	100.00	Photosystem II reaction center protein L OS=Drimys...	[more]
PSBL_DRIGR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Drimys...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004433_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939147 ID=CK939147; Name=CK939147; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTGGGGTCAATATCAGCAATGCAGTTCATCCAACGCTAAACC
TAATCGGAATTAGAGAGCTATGACACAATCAAACCCAAACGAACAAAATG
TTGAATTGAACCGTACCAGTCTCTACTGGGGGTTATTGCTCATTTTTGTA
CTTGCTGTTTTATTTTCCAATTACTTCTTCAATTAAGAGAAGAAAAGAGA
ATAGTATAAGAATCCAAAATAGTAGGAATTCTCTTATCCCATTCGGAAGA
AGCGCATCTTATAATTATCTATGACTGTTTATGTCTCTAGCGTGACCACT
TGCAAAAATGTGCAAAAATGTGGAGGGAAGCGGGATAAATGGCCGATACT
ACTGGAAGGATTCCCCTTTGGATAATAGGAACTGTAACTGGTATTCTTGT
GATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCCGGATTAGGTT
CGTCCTTGTAGTAATCGAATGAACTGCGTTATAGACATAAAAGCGTAAGA
ACTCAAGGTACCCTGTCGTTCCCGTGCTTTGTCTGATTCGAGGGGTAGGG
CCAGGGCCCCTTGAGTTCTTAATAAACATAATATTTTGGTTTGCTCGTAT
AAATGGAAAAAACGGATCGCTTTTTCCGATGCTTCAAAAAAATCCATTTC
ATTTTTTTCTGATTTCTGATGATTTTT