CK939147 | Citrus Genome Database

Overview


Name	CK939147
Unique Name	CK939147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CORMA (Photosystem II reaction center protein L OS=Cornus mas GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CONAR (Photosystem II reaction center protein L OS=Convolvulus arvensis GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_COFAR (Photosystem II reaction center protein L OS=Coffea arabica GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_COECR (Photosystem II reaction center protein L OS=Coelogyne cristata GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CITSI (Photosystem II reaction center protein L OS=Citrus sinensis GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CHLSC (Photosystem II reaction center protein L OS=Chloranthus spicatus GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CERJA (Photosystem II reaction center protein L OS=Cercidiphyllum japonicum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CARPA (Photosystem II reaction center protein L OS=Carica papaya GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CAPAN (Photosystem II reaction center protein L OS=Capsicum annuum GN=psbL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_CALSE (Photosystem II reaction center protein L OS=Calystegia sepium GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of CK939147 vs. ExPASy Swiss-Prot

BLAST of CK939147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181


Match Name	E-value	Identity	Description
PSBL_CORMA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Cornus...	[more]
PSBL_CONAR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Convol...	[more]
PSBL_COFAR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Coffea...	[more]
PSBL_COECR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Coelog...	[more]
PSBL_CITSI	6.890e-15	100.00	Photosystem II reaction center protein L OS=Citrus...	[more]
PSBL_CHLSC	6.890e-15	100.00	Photosystem II reaction center protein L OS=Chlora...	[more]
PSBL_CERJA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Cercid...	[more]
PSBL_CARPA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Carica...	[more]
PSBL_CAPAN	6.890e-15	100.00	Photosystem II reaction center protein L OS=Capsic...	[more]
PSBL_CALSE	6.890e-15	100.00	Photosystem II reaction center protein L OS=Calyst...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004433_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939147 ID=CK939147; Name=CK939147; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTGGGGTCAATATCAGCAATGCAGTTCATCCAACGCTAAACC
TAATCGGAATTAGAGAGCTATGACACAATCAAACCCAAACGAACAAAATG
TTGAATTGAACCGTACCAGTCTCTACTGGGGGTTATTGCTCATTTTTGTA
CTTGCTGTTTTATTTTCCAATTACTTCTTCAATTAAGAGAAGAAAAGAGA
ATAGTATAAGAATCCAAAATAGTAGGAATTCTCTTATCCCATTCGGAAGA
AGCGCATCTTATAATTATCTATGACTGTTTATGTCTCTAGCGTGACCACT
TGCAAAAATGTGCAAAAATGTGGAGGGAAGCGGGATAAATGGCCGATACT
ACTGGAAGGATTCCCCTTTGGATAATAGGAACTGTAACTGGTATTCTTGT
GATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCCGGATTAGGTT
CGTCCTTGTAGTAATCGAATGAACTGCGTTATAGACATAAAAGCGTAAGA
ACTCAAGGTACCCTGTCGTTCCCGTGCTTTGTCTGATTCGAGGGGTAGGG
CCAGGGCCCCTTGAGTTCTTAATAAACATAATATTTTGGTTTGCTCGTAT
AAATGGAAAAAACGGATCGCTTTTTCCGATGCTTCAAAAAAATCCATTTC
ATTTTTTTCTGATTTCTGATGATTTTT