CK939140

Overview
NameCK939140
Unique NameCK939140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.221e-37
Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   99 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            M L   P+ S L+ M+E+  +D  + K+ N P+R Y+RDAKA+A TPADV E+PN+Y F+VDMPG+K  +IKVQVE+DNVL++S             KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:    1 MDLGRFPIISILEDMLEV-PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.368e-34
Identity = 75/150 (50.00%), Postives = 103/150 (68.67%), Query Frame = 3
Query:  117 PLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            P+FS L+ M+E  A +    K+ N P+R Y+RDAKA+A TPADV E+P++YVF VDMPG+K  +I+VQ+E++NVL++S             K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:    9 PIFSILEDMLE--APEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 70/168 (41.67%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFST-LQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNS--YVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX-----AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            M+  ++G    PL +  +Q ++++   D  + +  N PTR YVRD +A+A TP DVKE   S   V  VDMPG+   D++V+VED NVL IS                 KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:    1 MELSVVG--GEPLLAVAMQQLLDLDLPDELE-RQLNPPTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  177 KSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            K F+ PT +   +  A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   28 KDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  180 SFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            S ++P+ ++ R+  A   T  D KE P ++VF  D+PGLK  ++KV+VEDD VL IS            ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  213 DAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            ++ A A T  D KE P  +VF VD+PGLK  ++KV+VE+D VL IS            K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.485e-18
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  204 YVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            + R+  A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   44 FSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  210 RDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            RD  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   34 RDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTV 132          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  186 NAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            +A + ++ R+  A   T  D KE P ++VF  D+PG+K  ++KV++EDD VL IS            ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   35 SALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  213 DAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 506
            DA A AG   D KE P ++VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 137          
The following BLAST results are available for this feature:
BLAST of CK939140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS176_ARATH4.221e-3752.5617.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH4.368e-3450.0017.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ4.378e-2641.6719.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP14_SOYBN3.360e-1844.5517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA4.388e-1843.1218.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOLLC5.731e-1848.9817.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN7.485e-1847.5218.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16C_ORYSJ9.775e-1847.4716.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP12_MEDSA1.277e-1742.0618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HS174_ORYSJ1.277e-1750.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004433_H01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939140 ID=CK939140; Name=CK939140; organism=Citrus sinensis; type=EST; length=628bp
GGGGAACCAACAAAATACGAACGAACGAACGAATCCTCATTTAGCAGTAG
CGAACATCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCAT
GGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGA
TGGGGGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGC
ACGTACGTGAGAGACGCCAAGGCAGTGGCGGGGACGCCTGCGGACGTAAA
GGAGTATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGT
CGGGGGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGC
GGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAAT
GGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATG
CTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTG
ACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGA
GGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGT
GCTGATGTCTTTTCTATTTGCCGGTTGT
back to top