CK939135

Overview
NameCK939135
Unique NameCK939135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.195e-42
Identity = 83/158 (52.53%), Postives = 103/158 (65.19%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQ----ELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAECR 465
            +LWFDP+  +HTYSILWN  +IVF VD  PIR FKN++ +GV FP NQPM++YSSLWNADDWATRGGL KT+W +APF ASY+ F+ D C  S                   W+ Q    +LD+    RLKWV+  + IYNYC D  RFP  +PAEC+
Sbjct:  142 YLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQAS-------VEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPV-MPAECK 291          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.661e-42
Identity = 84/158 (53.16%), Postives = 102/158 (64.56%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWS-NGKXXXXXXXXXXXXXXXXWFSQ----ELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            +LWFDPT  +H YS+LWN  +IVF VD  PIR FKNS  +GV FP NQPM+IY+SLWNADDWATRGGL KTDW+ APF ASY+ F+ D C  S N K                W+ Q    +LD+   ++L WV+  Y IYNYC D KR+ Q +P EC
Sbjct:  138 YLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAK--------FCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQ-VPPEC 286          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.725e-41
Identity = 79/153 (51.63%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            +LWFDPT  +H+YS+LWN   IV  VD  PIR FKNS+ +GV FP NQPM+IYSSLW+ADDWATRGGL KT+W +APFTASY +F+ D C  +  +                 F Q+LD+    RL+WV++ Y +YNYC D  R+P   P EC
Sbjct:  140 YLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQKAF-QDLDALQYRRLRWVRQKYTVYNYCTDKARYPVP-PPEC 290          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.843e-41
Identity = 74/153 (48.37%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            +LWFDPTADFHTY I+WNPQ I+F VD  P+R FK  + +  A+P+++PMR++++LW+   WATR G VK DW+ APF  SYR ++ +ACV  N                  W  +ELD      + W ++NYM YNYCAD  RFPQG PAEC
Sbjct:  139 YLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDL--AYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACV--NNNPAGGWSSSWCPEGTSAWIHRELDGAELGTVAWAERNYMSYNYCADGWRFPQGFPAEC 287          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.460e-40
Identity = 80/158 (50.63%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFS----QELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAECR 465
            +LWFDPT D+H+YS+LWN   I F VD TPIR FKNS+ +GV +P +QPM++YSSLWNADDWATRGG  KTDW+ APF ASYR F+ D C  S                   W+     Q+LD+    RL WV+K + IYNYC D  R+    P EC+
Sbjct:  139 YLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEAS-------AEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAP-ECK 288          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.549e-40
Identity = 80/158 (50.63%), Postives = 100/158 (63.29%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQ----ELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAECR 465
            +LWFDPT +FHTYSILW+ + +VF VD TPIR  KN E  G+ F K+Q M +YSS+WNADDWAT+GGLVKTDW+HAPF ASY+ F  DAC     +                W+ +    EL      +L WV+ N+MIY+YC DA RFP   P EC+
Sbjct:  134 NLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDAC-----EIPTTTDLSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPV-TPLECQ 285          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    7 LWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESI--GVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQ----ELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAECRTS 471
            LWFDPT D+HTYSILWN  ++VF VD  PIR +KNS+ +     FP  +PM ++SS+WNADDWATRGGL KTDW  APF +SY++F  + C W +                  W+ Q     L  T +    WVQ+N ++Y+YC D++RFP  LP EC  S
Sbjct:  136 LWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPFVSSYKDFAVEGCRWKD------PFPACVSTTTENWWDQYDAWHLSKTQKMDYAWVQRNLVVYDYCKDSERFPT-LPWECSIS 289          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 72/158 (45.57%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFS----QELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAECR 465
            +LWFDP+ D+HTY+ILW+ + IVF VD  PIRE+KN+E+  +A+P +QPM +YS+LW ADDWATRGGL K DW+ APF A Y++F+ + C                      W+     Q L++    R +WV+ N+M+Y+YC D  RFP   P ECR
Sbjct:  143 NLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGC--------PVPGPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVP-PPECR 291          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.291e-36
Identity = 71/156 (45.51%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    4 HLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFSQELDSTSQER---LKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            HLWFDP  DFHTYSILWN  +IVF VD  PIR ++N    GVA+P+ QPM + +SLWN + WATRGG  K DW+  PF AS+ ++  DAC+W                    W   E  S ++ +    KWV+K ++IY+YC D  RF   LP EC
Sbjct:  144 HLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGN-----TSFCNGESTENWWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKEC 294          
BLAST of CK939135 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.115e-35
Identity = 67/155 (43.23%), Postives = 96/155 (61.94%), Query Frame = 1
Query:   10 WFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSNGKXXXXXXXXXXXXXXXXWFS----QELDSTSQERLKWVQKNYMIYNYCADAKRFPQGLPAEC 462
            WF+PT  FH Y+I WNP  +V+ VDGTPIR F+N ES G+A+P  Q M++++SLWNA+DWAT+GG VKT+WT APF A  R + A AC+W   K                W++     +L ++   +++ ++  +MIY+YC D  RF   +P EC
Sbjct:  136 WFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLW---KGSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPEC 287          
The following BLAST results are available for this feature:
BLAST of CK939135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH4_ARATH1.195e-4252.53Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHA_PHAAN2.661e-4253.16Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC1.725e-4151.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ3.843e-4148.37Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH_WHEAT1.460e-4050.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH5.549e-4050.63Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ARATH1.973e-3746.58Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH1.973e-3745.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH8.291e-3645.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH4.115e-3543.23Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939135 ID=CK939135; Name=CK939135; organism=Citrus sinensis; type=EST; length=638bp
GGGCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTATCCT
CTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATAAGAG
AGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCAGCCA
ATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAAGAGG
TGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCCTACA
GAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTCTTGC
GCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCTCACA
AGAGCTTGATTCAACAAGTCAAGAAAGGCTGAAATGGGTGCAGAAGAATT
ACATGATTTACAATTATTGCGCTGATGCAAAGAGATTTCCCCAGGGACTC
CCTGCAGAATGCAGAACCTCTTAGAAGTTTTGCAAAATCAACACATACAT
CAAAAAAATTTATTCTTTTTGTCAATTCTTTGATTCTTTGTTGTATTTTG
TCGTCAATAAAATGGCAAATTAGTCCAACTTTCTCAATGTAATACAAAAT
TTAGCATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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