CK939126

Overview
NameCK939126
Unique NameCK939126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MGL+ +KLF+ L  ++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MGL+ + L +RLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNI FTVWDV
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDV 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.855e-26
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG   T L  RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF VETVEYKNISFTVWDV
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68          
The following BLAST results are available for this feature:
BLAST of CK939126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ARF_CANAL4.605e-2685.29ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF1_RAT4.605e-2688.24ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE4.605e-2688.24ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA4.605e-2688.24ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_LOCMI4.605e-2688.24ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_HUMAN4.605e-2688.24ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_DROME4.605e-2688.24ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_BOVIN4.605e-2688.24ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF2_DROME6.015e-2685.29ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_DUGJA7.855e-2688.24ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004433_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939126 ID=CK939126; Name=CK939126; organism=Citrus sinensis; type=EST; length=743bp
GGGGAAGGCAAAAACCGCTCTCTTCCTCAGGCAAGTCGTTTTACTCTCTA
GTTGGTCTCGCTTAATCGTACGGTCTCTAGATCCTGATCTCTCCATTTTC
TTATTTGATTGATATCTCTAGTCTTTCTTGATCTCTATGTCTGATCTGGC
CTTGTTATTCTTCGATCTGCATGTTAATTGCGAGCCGTTGCTCGAATTGG
AAACATTTTTGTCTGTGATCTCCTCATTTCTCATCTTATACAACTTTGAA
TTATCGAAATTACGTATTGATGATTAAGATTTAGGTGTGTTTTATGTCTT
TATTGTATGATCTAACGTAATTGAGGTTTATTTCGTTCTTAAATTATTTC
TAAATGATATTTGGTTATTTTTTCAATTAGATCTAATAATTGCATTTTTG
TTAACCGAATCTTGTGGTGTTATGTAGATATGGTTGGGGCTTTCTTTTGT
TTGTTAGATTTTAATGCTATTGTAATGTTGGAGATGTGTGAACATGTCAT
CTGATCTCTGCATTGGTTGGTGCTTGCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTNNNGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCG
back to top