CK939126

Overview
NameCK939126
Unique NameCK939126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 2
Query:  557 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K+ S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GF VETV YKN+ F VWDV
Sbjct:    3 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 64          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGF VETV+Y NI F VWD+
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGF VETV+Y NI F VWD+
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGF VETV YKN+ F VWD+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGF VETV YKN+ F VWD+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGF VETV YKN+ F VWD+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.214e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGF VETV YKN+ F VWD+
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.891e-20
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  551 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGF VET+EYKN+S TVWDV
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDV 76          
The following BLAST results are available for this feature:
BLAST of CK939126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ARF6_MOUSE5.826e-2175.81ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN5.826e-2175.81ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK5.826e-2175.81ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF3_ARATH1.298e-2066.18ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP1.298e-2066.18ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT2.214e-2067.65ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE2.214e-2067.65ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN2.214e-2067.65ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN2.214e-2067.65ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARFJ_DICDI2.891e-2070.31ADP-ribosylation factor J OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939126 ID=CK939126; Name=CK939126; organism=Citrus sinensis; type=EST; length=743bp
GGGGAAGGCAAAAACCGCTCTCTTCCTCAGGCAAGTCGTTTTACTCTCTA
GTTGGTCTCGCTTAATCGTACGGTCTCTAGATCCTGATCTCTCCATTTTC
TTATTTGATTGATATCTCTAGTCTTTCTTGATCTCTATGTCTGATCTGGC
CTTGTTATTCTTCGATCTGCATGTTAATTGCGAGCCGTTGCTCGAATTGG
AAACATTTTTGTCTGTGATCTCCTCATTTCTCATCTTATACAACTTTGAA
TTATCGAAATTACGTATTGATGATTAAGATTTAGGTGTGTTTTATGTCTT
TATTGTATGATCTAACGTAATTGAGGTTTATTTCGTTCTTAAATTATTTC
TAAATGATATTTGGTTATTTTTTCAATTAGATCTAATAATTGCATTTTTG
TTAACCGAATCTTGTGGTGTTATGTAGATATGGTTGGGGCTTTCTTTTGT
TTGTTAGATTTTAATGCTATTGTAATGTTGGAGATGTGTGAACATGTCAT
CTGATCTCTGCATTGGTTGGTGCTTGCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTNNNGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCG
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