CK939126

Overview
NameCK939126
Unique NameCK939126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  581 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGF VETVEYKN+ FT+WDV
Sbjct:  382 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV 435          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  581 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGF VETVEYKN+ FT+WDV
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV 455          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  581 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGF VETVEYKN+ FT+WDV
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDV 455          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG  VE +  KN  F +WD+
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDI 67          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG  VE +  KN  F +WD+
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDI 67          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  584 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEY-KNISFTVWDV 742
            K+ ++L++GLD+AGK+T+LYKLKL + +TTIPTIGF VE +E  +N S TVWDV
Sbjct:   12 KQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDV 65          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MGL   KLF   +  K+ +I++VGLD AGKTTILY     + V T PTIG  VE V Y+N+ F +WD+
Sbjct:    1 MGLIMAKLFQSWWIGKKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDI 68          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG  VE +   N  F +WD+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDI 67          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG  VE +   N  F +WD+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDI 67          
BLAST of CK939126 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  539 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFXVETVEYKNISFTVWDV 742
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG  VE +   N  F +WD+
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDI 67          
The following BLAST results are available for this feature:
BLAST of CK939126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ARD1_RAT1.815e-1466.67GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARD1_MOUSE1.815e-1466.67GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.815e-1466.67GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARL5B_MOUSE2.219e-1252.94ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN2.219e-1252.94ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL14_HUMAN6.456e-1261.11ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL5_CAEEL1.438e-1150.00ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARL5A_RAT1.438e-1148.53ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_MOUSE1.438e-1148.53ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_HUMAN1.438e-1148.53ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939126 ID=CK939126; Name=CK939126; organism=Citrus sinensis; type=EST; length=743bp
GGGGAAGGCAAAAACCGCTCTCTTCCTCAGGCAAGTCGTTTTACTCTCTA
GTTGGTCTCGCTTAATCGTACGGTCTCTAGATCCTGATCTCTCCATTTTC
TTATTTGATTGATATCTCTAGTCTTTCTTGATCTCTATGTCTGATCTGGC
CTTGTTATTCTTCGATCTGCATGTTAATTGCGAGCCGTTGCTCGAATTGG
AAACATTTTTGTCTGTGATCTCCTCATTTCTCATCTTATACAACTTTGAA
TTATCGAAATTACGTATTGATGATTAAGATTTAGGTGTGTTTTATGTCTT
TATTGTATGATCTAACGTAATTGAGGTTTATTTCGTTCTTAAATTATTTC
TAAATGATATTTGGTTATTTTTTCAATTAGATCTAATAATTGCATTTTTG
TTAACCGAATCTTGTGGTGTTATGTAGATATGGTTGGGGCTTTCTTTTGT
TTGTTAGATTTTAATGCTATTGTAATGTTGGAGATGTGTGAACATGTCAT
CTGATCTCTGCATTGGTTGGTGCTTGCAGTTGTGAAAAATGGGGCTGTCT
TTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGAATTCT
CATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCTTA
AGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTNNNGTAGAG
ACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCG
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