CK939111

Overview
NameCK939111
Unique NameCK939111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 155.221 bits (391), Expect = 3.640e-37
Identity = 86/170 (50.59%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            +YP++DV  P   ++  +P KLRAS+ PGTVLILLAGRF GKRVV+LK L    LL TGPFKVNGVPLRRVN  YVIATSTKV + GV++ KF+ +YF                         +  ++ +DQK VD  L+  I+    LK YLSA FSLK+G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQTKE--IKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.965e-36
Identity = 85/170 (50.00%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            +YP++DV      ++  +P KLRAS+ PGTVLILLAGRF GKRVV+LK L    LL +GPFKVNGVPLRRVN  YVIATSTKV + GV++ KF+ +YF                         +  ++ +DQK VD  LI  I+    LK YLSA FSLK+G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKE--IKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 3
Query:  255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATST-KVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            +YPA     P   ++  +PTKLRAS+ PGTV ILLAGRF GKRVV L QL    L+ TGP+KVNGVP+RRVN  YVIATS  K+D+SGV + KF   YF                         LP ++  DQK VDA+L+ +I+A+ ++K YL+A F+L +G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYF-AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31
Identity = 76/160 (47.50%), Postives = 96/160 (60.00%), Query Frame = 3
Query:  288 ANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL-GKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764
            A K+  +   LR SITPGTVLI+LAGRF GKRVV LKQL SGL+L TGPFKVNGVPLRR++Q YVIATSTK+D+S V +    +D YF                         + D +  DQK+VD+ ++  ++    L  YL  +F LK G  PH+L F
Sbjct:   77 AAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236          
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25
Identity = 88/230 (38.26%), Postives = 117/230 (50.87%), Query Frame = 3
Query:   96 SRNPDLIRGVGKFSRSKMYHKRGLWAIK--AKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLT-SGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLK---TYLSARFSLKSGMKPHELVF 764
            SRN DL  GV +FS S++  K+G    K         PK                    +  K  L +    K   LR ++TPGTVLI+LAGR  GKRVVFLKQL  SGLLL TGP K+NG PLRR+ Q++VIATS KV++SGV + +  +D+YF                         + + +K D KTVDA ++ +I+   + K    YL  RFSL     PH++ F
Sbjct:   11 SRNFDLSPGVLRFSASRLRLKKGEKKPKFTKDTSAKLPK-----------------LQRNGTKFALGHS---KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF---KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217          
The following BLAST results are available for this feature:
BLAST of CK939111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6B_YEAST3.640e-3750.5960S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST8.965e-3650.0060S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO2.699e-3246.7860S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_DICDI2.984e-3147.5060S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_CAEEL3.196e-2538.2660S ribosomal protein L6 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_A06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939111 ID=CK939111; Name=CK939111; organism=Citrus sinensis; type=EST; length=778bp
GGGGGCGCCACTTTCTTTCAAACACTTTTCACCAACAGCGAGTAGCAGAG
AGCGGCTTCAACGAAATGGCGCCGAAAGCTGCGACTGGAAGAACGAGCCG
TAACCCGGACCTCATACGCGGCGTTGGCAAGTTCTCCAGATCCAAAATGT
ACCACAAGCGCGGCCTCTGGGCAATCAAGGCAAAAAACGGCGGCGTTTTC
CCGAAACACGACCCAAAGCCTGCTGCTGCTGAGACGCCAGCCAAGCCTCC
CAAGTTCTACCCAGCTGATGATGTCAAGAAGCCGCTCGCCAACAAGCGAA
AGCACAAACCCACCAAACTCAGAGCGAGTATTACACCTGGGACAGTGTTG
ATTCTATTGGCTGGAAGGTTTATGGGGAAGAGAGTTGTTTTTCTGAAACA
ACTTACATCTGGGTTGCTTCTTGCTACCGGGCCGTTCAAGGTCAACGGTG
TTCCATTGAGACGGGTAAATCAATCTTATGTGATTGCTACCTCTACCAAG
GTTGACATTTCTGGAGTCGATCTAGGAAAGTTTGATGACCAATACTTTGA
AAAGGAAGCCGAGAAGAAGAAAAAGAAGGGGGAAGGAGAATTTTTTGAGG
CAGAGAAGGAGGAAAAGAAGGTGCTCCCAGATGATAAGAAAGATGATCAA
AAGACTGTTGATGCGCAATTGATAAAATCCATTGAAGCAGTGCTAGACTT
GAAGACCTACTTGTCAGCGAGGTTTTCTCTCAAGTCAGGCATGAAACCTC
ATGAGCTTGTCTTTTAGAGGAGTTGTCC
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