CK939111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 155.221 bits (391), Expect = 3.640e-37 Identity = 86/170 (50.59%), Postives = 106/170 (62.35%), Query Frame = 3 Query: 255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 +YP++DV P ++ +P KLRAS+ PGTVLILLAGRF GKRVV+LK L LL TGPFKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF + ++ +DQK VD L+ I+ LK YLSA FSLK+G KPH L F Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQTKE--IKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 8.965e-36 Identity = 85/170 (50.00%), Postives = 105/170 (61.76%), Query Frame = 3 Query: 255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 +YP++DV ++ +P KLRAS+ PGTVLILLAGRF GKRVV+LK L LL +GPFKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF + ++ +DQK VD LI I+ LK YLSA FSLK+G KPH L F Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKE--IKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32 Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 3 Query: 255 FYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATST-KVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 +YPA P ++ +PTKLRAS+ PGTV ILLAGRF GKRVV L QL L+ TGP+KVNGVP+RRVN YVIATS K+D+SGV + KF YF LP ++ DQK VDA+L+ +I+A+ ++K YL+A F+L +G +PH + F Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYF-AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31 Identity = 76/160 (47.50%), Postives = 96/160 (60.00%), Query Frame = 3 Query: 288 ANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLTSGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL-GKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 764 A K+ + LR SITPGTVLI+LAGRF GKRVV LKQL SGL+L TGPFKVNGVPLRR++Q YVIATSTK+D+S V + +D YF + D + DQK+VD+ ++ ++ L YL +F LK G PH+L F Sbjct: 77 AAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236
BLAST of CK939111 vs. ExPASy Swiss-Prot
Match: RL6_CAEEL (60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25 Identity = 88/230 (38.26%), Postives = 117/230 (50.87%), Query Frame = 3 Query: 96 SRNPDLIRGVGKFSRSKMYHKRGLWAIK--AKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLANKRKHKPTKLRASITPGTVLILLAGRFMGKRVVFLKQLT-SGLLLATGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVLDLK---TYLSARFSLKSGMKPHELVF 764 SRN DL GV +FS S++ K+G K PK + K L + K LR ++TPGTVLI+LAGR GKRVVFLKQL SGLLL TGP K+NG PLRR+ Q++VIATS KV++SGV + + +D+YF + + +K D KTVDA ++ +I+ + K YL RFSL PH++ F Sbjct: 11 SRNFDLSPGVLRFSASRLRLKKGEKKPKFTKDTSAKLPK-----------------LQRNGTKFALGHS---KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF---KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217 The following BLAST results are available for this feature:
BLAST of CK939111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939111 ID=CK939111; Name=CK939111; organism=Citrus sinensis; type=EST; length=778bpback to top |