CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGL--GHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRG 377
            + HV+N+D+P +I++YVHRIGRTGR GK+GIAT F N+N ++     L  L+QEA Q +P  L             + AS   G    GG   G   R                  DY+G GGY G
Sbjct:  477 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLA-RSLAELMQEANQEVPEWLTRY---------ASRASFGGGKKRSGGRFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGG 592          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_VANPO (ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMED 221
            ++ HV+NYD+P++I++YVHRIGRTGR G TG+AT F N+  +   +  +  LL EA Q IPP    LND M +
Sbjct:  485 NVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRG-NRNIVKGMYELLAEANQEIPPF---LNDVMRE 553          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVK------GCAYCGGLGHR 287
            ++HVIN+D+P+++E YVHRIGRTGR G  G+AT+F N+ ++     DL  LL E KQ IP         MED+ +     G K      G  Y GG G R
Sbjct:  628 VKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNE-KNRNICSDLLELLIETKQEIPSF-------MEDMSSDRGHGGAKRAGRGGGGRYGGGFGSR 719          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P  L    + M         S  +   + GG G   RD  +     S    +SR     SGG
Sbjct:  507 NVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNIT-KDLLDLLVEAKQEVPSWL----ENMAYEHHYKGGSRGRSKRFSGGFG--ARDYRQSSGSSSSGFGASRGSSSRSGG 621          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P  L  +    +        S  K   + GG G   RD  +     S    +SR     SGG
Sbjct:  507 NVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINIT-KDLLDLLVEAKQEVPSWLENMAYEHQYKGGSRGRS--KSNRFSGGFG--ARDYRQSSGSSSSGFGASRGSSSRSGG 623          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_DEBHA (ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii GN=DED1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPK 305
            ++ H++NYD+P++I++YVHRIGRTGR G  GIAT F N+N ++  +  L  LL EA Q IP  L ++       ++      ++G +  GG G   RD  K
Sbjct:  481 NVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRN-NKNIVKGLVDLLTEANQEIPDFLNKIAR-----ESAFGGKSMRGGSSRGGRGGATRDFRK 575          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P++I++YVHRIGRTGR G  GIAT F N+N ++  +  L  LL EA Q +P  L ++
Sbjct:  511 NVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRN-NKNVVKGLIELLSEANQEVPDFLTKI 576          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 49/122 (40.16%), Postives = 64/122 (52.46%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P  L   N   E      +    K   + GG G   RD  +     S    +SR     SGG
Sbjct:  507 NVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNIT-KDLLDLLVEAKQEVPSWLE--NMAYEHHYKGGSRGRSKSNRFSGGFG--ARDYRQSSGSSSSGFGASRGSSSRSGG 623          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HV+NYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + DL  LL+EA Q +P  L  +
Sbjct:  528 NVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRDLLDLLKEANQEVPSFLESI 593          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 47/125 (37.60%), Postives = 61/125 (48.80%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRG 377
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + DL  LL+EA Q +P  L  +             SG  G    GG G R R        + +         FG   Y G
Sbjct:  516 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPSFLESI---------AREGSGYGG---RGGRGGRGRGANATRDMRRVGGGMGGPPSFGGSSYGG 627          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RH11_ARATH1.172e-1337.30DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
DED1_VANPO1.172e-1349.32ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma... [more]
DDX3_DROME1.172e-1343.00ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DDX3Y_PONAB1.172e-1339.34ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]
DDX3Y_PANTR1.172e-1339.34ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
DED1_DEBHA1.530e-1339.60ATP-dependent RNA helicase DED1 OS=Debaryomyces ha... [more]
DED1_CANAL1.530e-1350.75ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DDX3Y_HUMAN1.530e-1340.16ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DED1_PHANO1.999e-1350.75ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_ASPOR1.999e-1337.60ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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