CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 47/123 (38.21%), Postives = 60/123 (48.78%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGY 371
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + DL  LL+EA Q +P  L  +             SG  G    GG G R R        + M         FG   Y
Sbjct:  517 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPSFLESI---------AREGSGYGG---RGGRGGRGRGANATRDMRRMGGGMGGPPSFGGSSY 626          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + DL  LL+EA Q +P  L  +
Sbjct:  514 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPSFLESI 579          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_ASPTN (ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ded1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + DL  LL+EA Q +P  L  +
Sbjct:  516 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRDLIDLLKEAHQEVPTFLESI 581          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHR-IRDCPKLEH--------QKSMAIASSRRDYFGSGGYRG 377
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P  L  +     +     ++ G     + GG G R  R      +          S +  SS    FG GGY G
Sbjct:  508 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNIT-KDLLDLLVEAKQEVPSWLESM---AYEHHYKGSSRGRSKSRFSGGFGARDYRQSSGSANAGFNSNRANSSRSSGSSHNRGFGGGGYGG 637          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P   + L +   +      + G     + GG G   RD  +     S + +S R     SGG
Sbjct:  508 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINIT-KDLLDLLVEAKQEVP---SWLENMAFEHHYKGGSRGRSKSRFSGGFG--ARDYRQSSGASSSSFSSGRASNSRSGG 623          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HV+NYD+P +I++YVHRIGRTGR G TGI+T F N+  +   + DL  LL+EA Q IP  L  +
Sbjct:  513 NVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG-NRGVVRDLIELLKEANQEIPAFLENI 578          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDY--FGSGGYRG 377
            + HVINYD+P ++++YVHRIGRTGR G TGIAT F N+  +   + +L  LL+EA Q +P  L          + I   S   G    GG G R R               + RD+  FG GG+ G
Sbjct:  514 VTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG-NRGIVRELMDLLKEANQEVPAFL----------ETIARESSFGG----GGRGGRSRG--------GGGRGGATRDFRKFGGGGFGG 616          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +++HV+NYD+P +I++YVHRIGRTGR G TGI+T F N+  +     DL  LL+EA Q IP  L  +
Sbjct:  513 NVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFNRG-NRGVCRDLIELLKEANQEIPSFLENI 578          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + +L  LL+EA Q +P  L
Sbjct:  521 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRELLELLKEANQEVPAFL 583          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_AJECN (ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DED1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P EI++YVHRIGRTGR G TGI+T F +++++      L  LL++A Q +P  L +L
Sbjct:  529 NVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSLVDLLKDANQEVPDFLEKL 595          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DED1_ASPNC1.999e-1338.21ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]
DED1_EMENI2.611e-1352.24ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DED1_ASPTN2.611e-1352.24ATP-dependent RNA helicase ded1 OS=Aspergillus ter... [more]
DDX3Y_MOUSE2.611e-1337.31ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DDX3L_MOUSE2.611e-1338.52Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DED1_SCLS13.410e-1350.75ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
DED1_GIBZE3.410e-1338.10ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]
DED1_BOTFB3.410e-1350.75ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DED1_NEUCR4.453e-1353.13ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_AJECN4.453e-1349.25ATP-dependent RNA helicase DED1 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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