CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_PICGU (ATP-dependent RNA helicase DED1 OS=Pichia guilliermondii GN=DED1 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELN 206
            ++ HV+NYD+P +I++YVHRIGRTGR G  GIAT F N+N +   +  +  LL EA Q +P  L +++
Sbjct:  494 NVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRN-NRNVVKGMIELLSEANQEVPDFLQKIS 560          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N++ +   + +L  LL+EA Q +P  L  +
Sbjct:  518 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRS-NRGVVRELIDLLKEAHQEVPSFLESI 583          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + +L  LL+EA Q +P  L  +
Sbjct:  520 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRELIDLLKEAHQEVPSFLESI 585          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P++I++YVHRIGRTGR G  GIAT F N+N ++  +  +  LL EA Q +P  L ++
Sbjct:  500 NVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRN-NKNIVKGMLDLLTEANQEVPDFLNKI 565          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_KLULA (ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis GN=DED1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVIN+D+P +I++YVHRIGRTGR G TG+ATTF N+  ++    +L  LL EA Q +P  L  +
Sbjct:  484 NVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRG-NKNVAKELVSLLSEANQEVPSFLTTI 549          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_ASPCL (ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F N+  +   + +L  LL+EA Q +P  L  +
Sbjct:  519 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NRGVVRELIDLLKEAHQEVPSFLESI 584          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3_XENLA (Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +++HVIN+D+P++IE YVHRIGRTGR G  G+AT+F N+     T  DL  LL EAKQ +P  L  +
Sbjct:  550 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINIT-KDLLDLLVEAKQEVPSWLENM 615          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_COCIM (ATP-dependent RNA helicase DED1 OS=Coccidioides immitis GN=DED1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ HV+NYD+P +I++YVHRIGRTGR G TG++T F N+  +   + DL  LL+EA Q +P  L  +
Sbjct:  504 NVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNRG-NRGVVRDLIELLKEAHQEVPAFLENI 569          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_CHAGB (ATP-dependent RNA helicase DED1 OS=Chaetomium globosum GN=DED1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            ++ HVINYD+P ++++YVHRIGRTGR G TGIAT F N+  +   + +L  LL+EA Q +P  L
Sbjct:  524 NVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG-NRGIVRELLDLLKEANQEVPAFL 586          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52_ARATH (DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 383
            + HV+N+D+P +I++YVHRIGRTGR G +G+AT F N N + T    L  L+QEA Q +P  L                SG +     GG   R         ++S +      DY+G GG  G +
Sbjct:  474 VAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNT-TMAKPLAELMQEANQEVPDWLTRYASRASFGGGKNRRSGGR----FGGRDFR---------RESFSRGGGGADYYGGGGGYGGV 585          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DED1_PICGU5.816e-1347.06ATP-dependent RNA helicase DED1 OS=Pichia guillier... [more]
DED1_ASPFU5.816e-1350.75ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DED1_NEOFI7.596e-1350.75ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_LODEL7.596e-1349.25ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DED1_KLULA7.596e-1349.25ATP-dependent RNA helicase DED1 OS=Kluyveromyces l... [more]
DED1_ASPCL7.596e-1350.75ATP-dependent RNA helicase ded1 OS=Aspergillus cla... [more]
DDX3_XENLA7.596e-1352.24Putative ATP-dependent RNA helicase an3 OS=Xenopus... [more]
DED1_COCIM9.920e-1347.76ATP-dependent RNA helicase DED1 OS=Coccidioides im... [more]
DED1_CHAGB9.920e-1351.56ATP-dependent RNA helicase DED1 OS=Chaetomium glob... [more]
RH52_ARATH1.296e-1234.92DEAD-box ATP-dependent RNA helicase 52 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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