CX078338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12 Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197 + HV+N+D+P +I++YVHRIGRTGR GK+G+AT F N+N S + L L+QE+ Q +P L+ Sbjct: 485 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNS-SMARSLAELMQESNQEVPAWLS 547
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197 D+ HVINY+MP+ I+ Y HRIGRTGR GK G+AT+F+ ++ DLK +L ++ +PP LA Sbjct: 646 DVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTD-IFFDLKQMLIQSNSPVPPELA 709
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12 Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 I HV+NYDMP IE+YVHRIGRTGR G TG A +F N+ + DL +++EAKQ IPP L Sbjct: 432 ITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLG-GDLCKIMREAKQTIPPEL 493
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12 Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 ++ HV+NYD+P +I++YVHRIGRTGR G TGIAT F N+ ++ + +L +L+EA Q +P L Sbjct: 486 NVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NKGIVRELIDILKEAHQDVPQFL 548
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 ++ +VINYD+P +I++YVHRIGRTGR G G+AT+F N N S +L LL EA Q +P L + Sbjct: 463 NVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSN-SMNIAKELMDLLTEANQEVPQFLVNM 528
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL-DLKHLLQEAKQRIP 185 + HVIN+D+P +I++YVHRIGRTGR GK+G+AT F N+S T L L L+QEA Q +P Sbjct: 497 VAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF--NESNTPLARPLSELMQEANQEVP 555
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 ++ HVINYD+P +I++YVHRIGRTGR G TG A F N+N ++ +L LLQEA Q P L Sbjct: 498 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRN-NKGIAKELIELLQEANQECPSFL 560
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI HVINYD P E+YVHRIGRTGR G G A TF + ++ DL +L EAKQ+I P LAE+ Sbjct: 455 DITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQA-RDLVTILSEAKQQIDPRLAEM 520
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI HV+NYD P E+YVHRIGRTGR G G A TF + S+ DL +L EAKQ+I P LAE+ Sbjct: 445 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVTILTEAKQQIDPRLAEM 510
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12 Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI HV+NYD P E+YVHRIGRTGR G G A TF + S+ DL +L EAKQ+I P LAE+ Sbjct: 452 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVTILTEAKQQIDPRLAEM 517 The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bpback to top |