CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197
            + HV+N+D+P +I++YVHRIGRTGR GK+G+AT F N+N S +    L  L+QE+ Q +P  L+
Sbjct:  485 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNS-SMARSLAELMQESNQEVPAWLS 547          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197
            D+ HVINY+MP+ I+ Y HRIGRTGR GK G+AT+F+    ++    DLK +L ++   +PP LA
Sbjct:  646 DVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLENTD-IFFDLKQMLIQSNSPVPPELA 709          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            I HV+NYDMP  IE+YVHRIGRTGR G TG A +F   N+ +    DL  +++EAKQ IPP L
Sbjct:  432 ITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLG-GDLCKIMREAKQTIPPEL 493          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            ++ HV+NYD+P +I++YVHRIGRTGR G TGIAT F N+  ++  + +L  +L+EA Q +P  L
Sbjct:  486 NVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG-NKGIVRELIDILKEAHQDVPQFL 548          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++ +VINYD+P +I++YVHRIGRTGR G  G+AT+F N N S     +L  LL EA Q +P  L  +
Sbjct:  463 NVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSN-SMNIAKELMDLLTEANQEVPQFLVNM 528          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL-DLKHLLQEAKQRIP 185
            + HVIN+D+P +I++YVHRIGRTGR GK+G+AT F   N+S T L   L  L+QEA Q +P
Sbjct:  497 VAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFF--NESNTPLARPLSELMQEANQEVP 555          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            ++ HVINYD+P +I++YVHRIGRTGR G TG A  F N+N ++    +L  LLQEA Q  P  L
Sbjct:  498 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRN-NKGIAKELIELLQEANQECPSFL 560          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HVINYD P   E+YVHRIGRTGR G  G A TF   + ++    DL  +L EAKQ+I P LAE+
Sbjct:  455 DITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQA-RDLVTILSEAKQQIDPRLAEM 520          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+YVHRIGRTGR G  G A TF   + S+    DL  +L EAKQ+I P LAE+
Sbjct:  445 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVTILTEAKQQIDPRLAEM 510          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+YVHRIGRTGR G  G A TF   + S+    DL  +L EAKQ+I P LAE+
Sbjct:  452 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVTILTEAKQQIDPRLAEM 517          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RH52C_ORYSJ1.296e-1250.00DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH21_ORYSJ1.692e-1249.23DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
DBP2_LODEL2.210e-1257.14ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DED1_YARLI3.770e-1250.00ATP-dependent RNA helicase DED1 OS=Yarrowia lipoly... [more]
DBP1_CANGA3.770e-1249.25ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
RH52B_ORYSJ4.923e-1255.74DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
DED1_SCHPO4.923e-1253.13ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
DBP2_EMENI4.923e-1255.22ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DBP2_ASPOR4.923e-1255.22ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DBP2_ASPNC4.923e-1255.22ATP-dependent RNA helicase dbp2 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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