CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 185
            ++ HV+NYD+P+++++YVHRIGRTGR G  G AT F N+  ++  + DL  LL+EA Q +P
Sbjct:  518 NVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRG-NKNIVRDLIELLKEANQEVP 577          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+Y+HRIGRTGR G  G A TF   + S+    DL  +L EAKQ+I P LAE+
Sbjct:  440 DITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVTILTEAKQQIDPRLAEM 505          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F + +        L  +L +A+Q +P  L E+
Sbjct:  581 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEI 647          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+Y+HRIGRTGR G  G A TF     S+    DL  +L EAKQ+I P LAE+
Sbjct:  434 DITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQA-RDLVTILTEAKQQIDPRLAEM 499          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +I HV+NYD P   E+Y+HRIGRTGR G  G A TF   + S+    DL  +LQEAKQ I P LAE+
Sbjct:  453 NITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQA-RDLVGVLQEAKQHIDPRLAEM 518          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+Y+HRIGRTGR G  G A TF     S+    DL  +L EAKQ+I P LAE+
Sbjct:  436 DITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQA-RDLVTILTEAKQQIDPRLAEM 501          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQK 320
            +I+HVINYDMP++I++YVHRIGRTGR G  G AT+F +  +      DL  +L+ + Q +P  L       +   +  N  GV       G G+ + D   +E ++
Sbjct:  557 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTCGAGGDGGYSNQNFGGVD----VRGRGNYVGDATNVEEEE 658          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRG 377
            + HV+N+D+P +I++YVHRIGRTGR GK+G+AT F N   + +    L  L+QEA Q +P  L           + ++  G K     G  G R       + ++  +  S R  Y G GG  G
Sbjct:  487 VAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNT-SLARPLAELMQEANQEVPEWLTR-------YASRSSFGGGKNRRSGGRFGGR-------DFRREGSFGSGRGGYGGGGGGYG 595          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F +          L  +L +A+Q +P  L E+
Sbjct:  610 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEI 676          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +I HV+NYD P   E+Y+HRIGRTGR G  G A TF     S+    DL  +LQEAKQ I P LAE+
Sbjct:  442 NITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQA-RDLLGVLQEAKQEIDPRLAEM 507          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DED1_USTMA6.430e-1249.18ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DBP2_ASPCL6.430e-1253.73ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
DDX4_MOUSE8.398e-1246.27Probable ATP-dependent RNA helicase DDX4 OS=Mus mu... [more]
DBP2_NEOFI8.398e-1253.73ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
DBP2_CHAGB8.398e-1253.73ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_ASPFU8.398e-1253.73ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]
VASA_DROME1.097e-1135.85ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]
RH37_ARATH1.097e-1134.68DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
DDX4_BOVIN1.097e-1146.27Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DBP2_MAGGR1.097e-1153.73ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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