CX078338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11 Identity = 48/123 (39.02%), Postives = 58/123 (47.15%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYR 374 I HVINYDMP IE+YVHRIGRTGR G +G A +F + S+ DL +++EA Q +PP L D + G G GG G R R Y G GGYR Sbjct: 443 ITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLG-GDLCKIMREANQTVPPELQRF-DRRSYGSHMRFGQGRGGRGGRGGRGGR----------------GGRGGYGGGGGYR 547
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11 Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI+ VINYD P IE+YVHRIGRTGR G TG+A TF +Q DL +L+ A QR+P LA++ Sbjct: 462 DIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFF-CDQDSKYAADLIKILEGANQRVPRDLADM 527
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F + L +L +A+Q +P L E+ Sbjct: 606 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 672
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F + L +L +A+Q +P L E+ Sbjct: 609 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 675
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F + L +L +A+Q +P L E+ Sbjct: 608 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 674
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11 Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 +I HV+NYD P E+Y+HRIGRTGR G G A TF + S+ +L +LQEAKQ+I P LAE+ Sbjct: 449 NITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQA-RELVGVLQEAKQQIDPRLAEM 514
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 2.443e-11 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI+ V+NYD P +E+YVHRIGRTGR G TG A TF +Q DL +L+ A QR+PP + E+ Sbjct: 470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFG-DQDSKHASDLIKILEGANQRVPPQIREM 535
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI+ V+NYD P +E+YVHRIGRTGR G TG+A TF +Q DL +L+ A Q++PP + E+ Sbjct: 473 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFG-DQDAKHASDLIKILEGANQKVPPQVREM 538
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11 Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197 D+ VINYDMP ++ Y HRIGRTGR GKTG+ATTF+ + + LK L E +PP LA Sbjct: 540 DLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTL-EDKDVFYGLKQKLNECNSLVPPELA 603
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11 Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 185 + HVIN+D+P +I++YVHRIGRTGR GK+G+AT F N+ + + L L+QEA Q +P Sbjct: 502 VAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEG-NLSLARPLCELMQEANQEVP 560 The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bpback to top |