CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 48/123 (39.02%), Postives = 58/123 (47.15%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYR 374
            I HVINYDMP  IE+YVHRIGRTGR G +G A +F  +  S+    DL  +++EA Q +PP L    D       +    G  G    GG G R                  R  Y G GGYR
Sbjct:  443 ITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLG-GDLCKIMREANQTVPPELQRF-DRRSYGSHMRFGQGRGGRGGRGGRGGR----------------GGRGGYGGGGGYR 547          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI+ VINYD P  IE+YVHRIGRTGR G TG+A TF   +Q      DL  +L+ A QR+P  LA++
Sbjct:  462 DIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFF-CDQDSKYAADLIKILEGANQRVPRDLADM 527          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F +          L  +L +A+Q +P  L E+
Sbjct:  606 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 672          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F +          L  +L +A+Q +P  L E+
Sbjct:  609 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 675          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+D+P+ I+ YVHRIGRTGRCG TG A +F +          L  +L +A+Q +P  L E+
Sbjct:  608 NVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 674          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.871e-11
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +I HV+NYD P   E+Y+HRIGRTGR G  G A TF   + S+    +L  +LQEAKQ+I P LAE+
Sbjct:  449 NITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQA-RELVGVLQEAKQQIDPRLAEM 514          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.443e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI+ V+NYD P  +E+YVHRIGRTGR G TG A TF   +Q      DL  +L+ A QR+PP + E+
Sbjct:  470 DIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFG-DQDSKHASDLIKILEGANQRVPPQIREM 535          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI+ V+NYD P  +E+YVHRIGRTGR G TG+A TF   +Q      DL  +L+ A Q++PP + E+
Sbjct:  473 DIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFG-DQDAKHASDLIKILEGANQKVPPQVREM 538          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 197
            D+  VINYDMP  ++ Y HRIGRTGR GKTG+ATTF+   + +     LK  L E    +PP LA
Sbjct:  540 DLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTL-EDKDVFYGLKQKLNECNSLVPPELA 603          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 185
            + HVIN+D+P +I++YVHRIGRTGR GK+G+AT F N+  + +    L  L+QEA Q +P
Sbjct:  502 VAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEG-NLSLARPLCELMQEANQEVP 560          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DBP2_CANAL1.097e-1139.02ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
RH40_ORYSJ1.871e-1153.73DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
DDX4_PIG1.871e-1146.27Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_MACFA1.871e-1146.27Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DDX4_HUMAN1.871e-1146.27Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DBP2_NEUCR1.871e-1152.24ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
RH14_ARATH2.443e-1150.75DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
RH46_ARATH3.191e-1149.25DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH44_ARATH3.191e-1150.77Putative DEAD-box ATP-dependent RNA helicase 44 OS... [more]
RH37_ORYSJ3.191e-1151.67DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
back to top