CX078338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11 Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA-TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 +I HV+NYD P E+Y+HRIGRTGR G G A T F NQ + DL ++LQEAKQ+I P L E+ Sbjct: 449 NITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQAR--DLVNVLQEAKQQIDPRLVEM 514
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11 Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 I +VIN DMP IE+YVHRIGRTGR G TG A +F N S+ DL +++EA Q IPP L Sbjct: 421 ISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLG-GDLCKIMREANQTIPPEL 482
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 200 ++ HVINYD+P IE+YVHRIGRTGR GK G AT F ++ + L L+ EAKQ +P L + Sbjct: 419 NVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTES-DHSLAKGLLELMTEAKQDVPDWLVQ 483
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11 Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 ++QHVIN+++P+ I+ YVHRIGRTGRCG TG A +F + L +L +A+Q +P L E+ Sbjct: 593 NVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEI 659
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI +VINYD P E+YVH+IGRTGR G+TG A T+ S++ +L +L+EAKQ IP + E+ Sbjct: 444 DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSA-RELIGILREAKQEIPREIEEM 509
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI HV+NYD P E+YVHRIGRTGR G G A T + ++ DL ++L E+KQ+I P LAE+ Sbjct: 440 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA-RDLVNILTESKQQIDPRLAEM 505
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11 Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 I +VINYDMP IE+YVHRIGRTGR G TG A +F + Q++ L +++EA Q IPP L Sbjct: 429 INYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPEL 490
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11 Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 I +VINYDMP IE+YVHRIGRTGR G TG A +F + Q++ L +++EA Q IPP L Sbjct: 429 INYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPEL 490
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 DI+ VINYD P +E+YVHRIGRTGR G TG+A TF + Q DL +L+ A Q++PP + ++ Sbjct: 747 DIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTE-QDWKYAPDLIKVLEGANQQVPPQVRDI 812
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203 D+++VINYD P +E+YVHRIGRTGR G G A TF + DL ++L+EA Q++ P LA + Sbjct: 404 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA-KDLINILEEAGQKVSPELANM 469 The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bpback to top |