CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA-TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            +I HV+NYD P   E+Y+HRIGRTGR G  G A T F   NQ +    DL ++LQEAKQ+I P L E+
Sbjct:  449 NITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQAR--DLVNVLQEAKQQIDPRLVEM 514          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            I +VIN DMP  IE+YVHRIGRTGR G TG A +F   N S+    DL  +++EA Q IPP L
Sbjct:  421 ISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLG-GDLCKIMREANQTIPPEL 482          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 200
            ++ HVINYD+P  IE+YVHRIGRTGR GK G AT F  ++   +    L  L+ EAKQ +P  L +
Sbjct:  419 NVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTES-DHSLAKGLLELMTEAKQDVPDWLVQ 483          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            ++QHVIN+++P+ I+ YVHRIGRTGRCG TG A +F +          L  +L +A+Q +P  L E+
Sbjct:  593 NVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEI 659          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI +VINYD P   E+YVH+IGRTGR G+TG A T+     S++   +L  +L+EAKQ IP  + E+
Sbjct:  444 DISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSA-RELIGILREAKQEIPREIEEM 509          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+YVHRIGRTGR G  G A T    + ++    DL ++L E+KQ+I P LAE+
Sbjct:  440 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA-RDLVNILTESKQQIDPRLAEM 505          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            I +VINYDMP  IE+YVHRIGRTGR G TG A +F  + Q++     L  +++EA Q IPP L
Sbjct:  429 INYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPEL 490          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 3
Query:    6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194
            I +VINYDMP  IE+YVHRIGRTGR G TG A +F  + Q++     L  +++EA Q IPP L
Sbjct:  429 INYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE-QNKGLGAKLISIMREANQNIPPEL 490          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI+ VINYD P  +E+YVHRIGRTGR G TG+A TF  + Q      DL  +L+ A Q++PP + ++
Sbjct:  747 DIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTE-QDWKYAPDLIKVLEGANQQVPPQVRDI 812          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            D+++VINYD P  +E+YVHRIGRTGR G  G A TF     +     DL ++L+EA Q++ P LA +
Sbjct:  404 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA-KDLINILEEAGQKVSPELANM 469          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DBP2_GIBZE3.191e-1152.94ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DBP2_DEBHA3.191e-1155.56ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
RH52A_ORYSJ4.168e-1150.00DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
DDX4_RAT4.168e-1144.78Probable ATP-dependent RNA helicase DDX4 OS=Rattus... [more]
DBP2_USTMA4.168e-1149.25ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
DBP2_COCIM5.443e-1150.75ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_YEAST7.109e-1153.97ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS77.109e-1153.97ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
RH40_ARATH9.285e-1149.25DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH20_ORYSJ9.285e-1147.76DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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