CX078338

Overview
NameCX078338
Unique NameCX078338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            D+++VINYD P  +E+YVHRIGRTGR G  G A TF     +     +L ++LQEA Q++ P LA +
Sbjct:  412 DVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFA-KELTNILQEAGQKVSPELASM 477          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 43/94 (45.74%), Postives = 50/94 (53.19%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA-TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLG 281
            +I HV NYD P   E+Y+HRIGRTGR G+ G A T F   NQ +    DL ++L EAKQ I P LAE    M          G  G  Y GG G
Sbjct:  464 NITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQAR--DLVNVLTEAKQVIDPRLAE----MTRFGGGGGGRGYGGRGYGGGRG 551          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 43/94 (45.74%), Postives = 50/94 (53.19%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA-TTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLG 281
            +I HV NYD P   E+Y+HRIGRTGR G+ G A T F   NQ +    DL ++L EAKQ I P LAE    M          G  G  Y GG G
Sbjct:  417 NITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQAR--DLVNVLTEAKQVIDPRLAE----MTRYGGGGGGRGYGGRGYGGGRG 504          
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 3
Query:    3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 203
            DI HV+NYD P   E+YVHRIGRTGR G  G A T    + ++    DL  +L E+KQ+I P LAE+
Sbjct:  441 DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQA-RDLVAILSESKQQIDPRLAEM 506          
The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RH20_ARATH9.285e-1147.76DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DBP2_SCLS19.285e-1145.74ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_BOTFB9.285e-1145.74ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]
DBP2_AJECN9.285e-1150.75ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E03-J6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bp
CCGATATTCAGCATGTCATTAATTATGACATGCCTGCAGAAATAGAGAAC
TATGTCCACAGAATTGGACGAACGGGAAGATGTGGGAAGACTGGAATTGC
AACAACATTTATAAACAAGAACCAAAGTGAGACGACACTCCTTGATTTGA
AGCACCTGCTGCAAGAAGCAAAACAGAGGATTCCTCCTGTGCTGGCTGAG
CTAAATGATCCGATGGAGGATGTGGATGCAATTACAAATGCAAGTGGGGT
AAAGGGATGTGCATACTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTC
CCAAGTTAGAGCATCAGAAGAGCATGGCGATTGCCAGCTCTAGAAGGGAT
TATTTTGGTTCTGGAGGTTATAGAGGAGAAATTTGATGTACACTTATCAC
GGATGTATCTTCTTAAATTGATAGCTATTCTGGTAATGAATTCATCTGTA
CTTTATTTTTCTGTTTTTTTTAATAAAGAATGAAATTTCCAAAAAAAAAA
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