CK939015

Overview
NameCK939015
Unique NameCK939015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRI (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces ribosidificus GN=rbmC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 45/157 (28.66%), Postives = 70/157 (44.59%), Query Frame = 1
Query:  226 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGXXCEPLSVGLHACRRANIGPETNVLIMGAG 696
            ++P   P + LVR+    +CGSD+ + K +         P+V GHE +G +  V   +   + G  V  +  +SC  C HC      LC ++         G+ A  +  P     +LPD + L      EPL+V L+A  R  +     V +MGAG
Sbjct:   18 DIPDPAPGEALVRIAYNSVCGSDLSFYKGVWHGSTY---PVVPGHEWSGTVVDVNGPLGAELIGTNVVGDLTVSCGTCAHCTARTPTLCEDLGELGFTR-DGACAEYMTIPVGNLRRLPDTLPLRAACQVEPLAVALNAVDRLGVTAGEKVAVMGAG 170          
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: ADH_SULAC (NAD-dependent alcohol dehydrogenase OS=Sulfolobus acidocaldarius GN=adh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 49/168 (29.17%), Postives = 81/168 (48.21%), Query Frame = 1
Query:  208 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTL---RCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHP-ADLCFKLPD-NVSLEEGXXCEPLSVGLHACRRANIGPETNVLIMGAG 696
            L+++  ++P +G   VLV++   G+C +D+         R +      P+VIGHE AG + ++G  V+     D+V ++P I    C +CK G    C   K+     V+G     V+ P     FKL + + S      C  ++    A R AN+ P  +V+I+GAG
Sbjct:   13 LRLEDMDVPKVGVGQVLVKVDYAGVCHTDLSVRSGAIFNRISSSKPTLPLVIGHEIAGEVVELGGNVEGFKKSDKVLIDPWIGDGSCHYCKIGEDQYCDNPKWLGI-NVNGGYGEYVLVPDYRYMFKLRNLSTSTASPLACSGVT-AYRALRLANLDPSKSVMIIGAG 178          
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 47/166 (28.31%), Postives = 75/166 (45.18%), Query Frame = 1
Query:  226 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWRCDHCKGGRYNLCPE-------MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGXXCEPLSVGLHA-CRRANIGPETNVLIMGAG 696
            E   L P+DVL+ +K  GIC SD+H              PMV GHE AGV+  VG++V  L  GDRV +   + SC  C++C       C +          +   P +G  + ++V       ++PD + ++         +  ++  +  N+GP   V I+G G
Sbjct:   25 ERRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGIF---PMVPGHEIAGVVTAVGTKVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNVGPGKKVAIVGVG 187          
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  208 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFAT 516
            L I+  E+      +V ++M A G+CG+D+ +L T   + F    PM++GHE  G++E VG  V ++  GD+V L     C  C  C   + N+C E++   T
Sbjct:   22 LAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFC---PMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKT 121          
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  223 FELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVAL-EPGISCWRCDHCKGGRYNLCPEM------KFFATPPVHGSLANQVVHPADLCFKLPDNVSLE 600
            F   + G  DV  ++   GIC +D+   K       +   P+V GHE  GV+ +VG++VK    GD+V +     SC  CD C  G  N CP+M      K F     HG  ++ +V   D   ++PDN+ L+
Sbjct:   26 FSRRATGEKDVRFKVLFCGICHTDLSMAKN---EWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLD 155          
BLAST of CK939015 vs. ExPASy Swiss-Prot
Match: ADH_THEBR (NADP-dependent alcohol dehydrogenase OS=Thermoanaerobacter brockii GN=adh PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 52/165 (31.52%), Postives = 76/165 (46.06%), Query Frame = 1
Query:  226 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRY----NLCPEMKFF-ATPPVHGSLANQVVHPADL-CFKLPDNVSLEEGXXC-EPLSVGLHACRRANIGPETNVLIMGAGP 699
            E P+ GP+D +VR  AV  C SD+H   T+       +  M++GHE  G + +VGSEVK   PGDRV +      WR    + G +     +    KF      V G   +  V+ AD+    LP  + LE      + ++ G H    A+I     V ++G GP
Sbjct:   18 EKPAPGPFDAIVRPLAVAPCTSDIH---TVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFH--VNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGP 177          
The following BLAST results are available for this feature:
BLAST of CK939015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
DOIAD_STRRI2.223e-1128.662-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADH_SULAC2.223e-1129.17NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADHA_BACSU6.467e-1128.31Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
ADH6_RAT6.467e-1133.01Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
CADH7_ARATH8.446e-1132.33Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
ADH_THEBR8.446e-1131.52NADP-dependent alcohol dehydrogenase OS=Thermoanae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004435_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939015 ID=CK939015; Name=CK939015; organism=Citrus sinensis; type=EST; length=700bp
GCGGGGGCNNNCGAATCAAATCATATCCCATATCCAGAATCAGAATAAAT
GGTAGCTTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTG
TTTTTGAAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGA
GAAAAGAAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGT
CAACACCCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATG
ATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCAT
TATCTCAAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGT
GATTGGGCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGA
AGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGC
TGGCGATGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGAT
GAAATTTTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGG
TGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAG
GAAGGGGNNNTGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCG
TGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCA
back to top