CN187990

Overview
NameCN187990
Unique NameCN187990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 52/165 (31.52%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  188 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYE 682
            +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T  W+                L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +Y KY+
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQ 187          
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 54/160 (33.75%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  206 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685
            E+ VH+ +  G  AD+ +W+N++    +LG  T +W             V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQD 161          
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  203 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW             +C  L++ + +  +WS   +S  I   PP I ++ I E     L + + + I + +    +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLY----DISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEE 176          
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  215 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685
            VH+ LG G  AD+ LWRN+  +  +L  +T  W             V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN    +  +I   R+  + L V   LW +S VG+  N LTL YI  +L  + P++YEKY+D
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQD 169          
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 49/158 (31.01%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  215 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685
            V ++LG G  AD+ LW++K  S   L  AT  W             +C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V   T+PV+Y ++++
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHLL----MLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQE 157          
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 35/146 (23.97%), Postives = 71/146 (48.63%), Query Frame = 2
Query:  248 DVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685
            D++LWR KK++   L  +T+ W+            V    I  ++++FLW +    ++K  P +  + + EE V++   + R  +      +  + +  +   F   + G W++S +G+  +F T  +I  V+  TVP ++E+Y D
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGD 163          
The following BLAST results are available for this feature:
BLAST of CN187990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLP_ARATH3.743e-2431.52Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH4.888e-2433.75Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH4.575e-2233.13Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH5.975e-2235.03Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH3.751e-1631.01Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH2.782e-1123.97Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005F10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187990 ID=CN187990; Name=CN187990; organism=Citrus sinensis; type=EST; length=686bp
CGTCGACTGAGGGATTTGTACAGAGAGCGAGATGGCTGACTAGCATAAAC
ACGAGGAACCAGCCGGTGAATCGGTGAAGGAGAAGATAACGGAGAAGATC
CACGGCCACGATTCGTCGTCGTCGTCATCGTCATCTGACTCCGATGATGA
TAAGAAGTCATCTGCATCCTCCCTCAAGACCAAAGTATTTCGTCTCTTCG
GAAGAGAAAAGCCTGTTCACAAGGTTCTTGGTGGCGGAAAACCTGCGGAT
GTTTTCTTATGGAGGAACAAGAAGATTTCAGCAGGAGTACTTGGTGGGGC
TACTGCAATATGGGTTCTTTTTGAATTGCTTGAGTACCACCTTCTAACTC
TTGTCTGTCACTGCCTGATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCT
AATGCTTCCACCTTCATTAACAAGTCTCCACCACGCATTCCAGAAGTATA
TATCCCTGAGGAACCAGTTTTACAGTTGGCCTCTGCACTTAGGTTTGAGA
TCAATAGGGCCTTCCCTCTTCTGAGGGAAATAGCATCTGGAAGAGATCTG
AAGAAGTTTCTCTCGGTGATTGCTGGCTTGTGGGTTGTGTCGATTGTGGG
GAGCTGGTGCAATTTCTTGACCTTGTTCTACATAGTTTTTGTACTGCTTC
ACACTGTGCCTGTGATATATGAAAAGTATGAGGATC
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