CN187990
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24 Identity = 52/165 (31.52%), Postives = 90/165 (54.55%), Query Frame = 2 Query: 188 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYE 682 +RL GR+ VH+ +GGGK AD+ LWR + +S GV+ +T W+ L++ + + F+ + S F N+ +PE+ + EE V A++ R ++N + ++ G D + F V+ LW++S +GS+ + TL YI +L T+P +Y KY+ Sbjct: 23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQ 187
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24 Identity = 54/160 (33.75%), Postives = 90/160 (56.25%), Query Frame = 2 Query: 206 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 E+ VH+ + G AD+ +W+N++ +LG T +W V + ++++ +LFLW+ ++ N+ P++P + I EE V +A A+R IN + REI GR+ K+ V LW VS VG++ NFLT+ Y+ VL +P +YE+Y+D Sbjct: 2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQD 161
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22 Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 203 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 R + ++ LGGG+ AD+ W+NKK S +LG T IW +C L++ + + +WS +S I PP I ++ I E L + + + I + + +I+SG+D + + LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ Sbjct: 18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLY----DISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEE 176
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.975e-22 Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 2 Query: 215 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 VH+ LG G AD+ LWRN+ + +L +T W V + L++ +A+ FLW+ ++T +N+ P +P + IPEE + A LR IN + +I R+ + L V LW +S VG+ N LTL YI +L + P++YEKY+D Sbjct: 13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQD 169
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16 Identity = 49/158 (31.01%), Postives = 81/158 (51.27%), Query Frame = 2 Query: 215 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 V ++LG G AD+ LW++K S L AT W +C L++ + +LFLW+ F + PP E+ P+ P+ L S + + +L EIA G+D K FL I + ++ +GS+ + LT+ YI V T+PV+Y ++++ Sbjct: 4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHLL----MLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQE 157
BLAST of CN187990 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 35/146 (23.97%), Postives = 71/146 (48.63%), Query Frame = 2 Query: 248 DVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYED 685 D++LWR KK++ L +T+ W+ V I ++++FLW + ++K P + + + EE V++ + R + + + + + F + G W++S +G+ +F T +I V+ TVP ++E+Y D Sbjct: 18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGD 163 The following BLAST results are available for this feature:
BLAST of CN187990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CN187990 ID=CN187990; Name=CN187990; organism=Citrus sinensis; type=EST; length=686bpback to top |