CK938986

Overview
NameCK938986
Unique NameCK938986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length355
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_BUXMI (DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.843e-42
Identity = 83/102 (81.37%), Postives = 88/102 (86.27%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            M+ DGN  MSTIPG + IQFEGFCRFI QGL EELYKFPKIEDTDQE EFQLFVETYQL EPL+KERDAVYES TYSSELYV  GLIWK+  +MQEQTIFIG
Sbjct:    1 MIRDGNEEMSTIPGFSQIQFEGFCRFIDQGLMEELYKFPKIEDTDQEIEFQLFVETYQLAEPLIKERDAVYESLTYSSELYVPAGLIWKTSRNMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ILLOL (DNA-directed RNA polymerase subunit beta OS=Illicium oligandrum GN=rpoB PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.713e-42
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GMSTIPG + IQFEGFC+FI QGL EEL+KFPK+EDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIW++  DM++QT+FIG
Sbjct:    1 MLRDGNEGMSTIPGSSQIQFEGFCKFIDQGLAEELHKFPKMEDTDQEMEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWRAGRDMRKQTVFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.080e-41
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GM TIPG + IQFEGF RFI QGLTEEL+KFPKIEDTDQE EFQLFV+TY+LVEPL+KERDAVYES TYSSELYV  GLIWK+  DMQEQTIFIG
Sbjct:    1 MLRDGNEGMFTIPGFSQIQFEGFFRFIDQGLTEELHKFPKIEDTDQEIEFQLFVDTYRLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SINAL (DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.411e-41
Identity = 86/109 (78.90%), Postives = 90/109 (82.57%), Query Frame = -1
Query:    2 LINGKFKMLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 328
            +IN K KMLGDG  G STIPG N IQFEGF RFI QGL EEL KFPKIED D E EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  +MQEQ IFIG
Sbjct:    1 MINAK-KMLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIG 108          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.411e-41
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GMSTIPG + IQFEGFCRF+ QGL EEL+KFPKIEDTDQE EFQL VETYQL EPL+KERDAVYES T+SSELYV  GLIWK   DMQEQT+FIG
Sbjct:    1 MLRDGNEGMSTIPGFSQIQFEGFCRFVDQGLAEELHKFPKIEDTDQEIEFQLLVETYQLAEPLIKERDAVYESLTHSSELYVPAGLIWKVGRDMQEQTVFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ACOCL (DNA-directed RNA polymerase subunit beta OS=Acorus calamus GN=rpoB PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.105e-41
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = -1
Query:    2 DGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 298
            DGN GM TIPG + IQFEGFCRFI QGL EE +KFPKIEDTDQE EFQLFVE YQLVEPL+KERDAVYES TYSSELYV  GLIWK+  DMQEQTIFIG
Sbjct:    4 DGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_LEMMI (DNA-directed RNA polymerase subunit beta OS=Lemna minor GN=rpoB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML DGN GM TIPG + IQFEGFCRFI+QGL EE  KFPKIEDTDQE EF+LFVETYQL EPL+KERDAVYES TYSSELYV  GLIWK+  DM+EQT+FIG
Sbjct:    1 MLRDGNEGMFTIPGFSQIQFEGFCRFINQGLMEEFNKFPKIEDTDQEIEFKLFVETYQLAEPLIKERDAVYESLTYSSELYVLAGLIWKTNRDMKEQTVFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CALFG (DNA-directed RNA polymerase subunit beta OS=Calycanthus floridus var. glaucus GN=rpoB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = -1
Query:    2 MSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 283
            M TIPG + IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+  DMQEQTIFIG
Sbjct:    1 MPTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTGRDMQEQTIFIG 94          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ACOGR (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus GN=rpoB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41
Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = -1
Query:    2 DGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 298
            DGN GM TIPG + IQFEGFCRF+ QGL EE +KFPKIEDTDQE EFQLFVE YQLVEPL+KERDAVYES TYSSELYV  GLIWK+  DMQEQTIFIG
Sbjct:    4 DGNEGMFTIPGFSQIQFEGFCRFVDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102          
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.194e-40
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = -1
Query:    2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307
            ML +GN  MSTIPG N IQFEGFC+FI QGL EELYKFPKIEDTDQE EFQLFVETYQLVEP++KE+DAVY+S TYSSELYVS GLIWK+  ++QEQTI IG
Sbjct:    1 MLREGNELMSTIPGFNQIQFEGFCQFIDQGLPEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKEKDAVYKSLTYSSELYVSAGLIWKTGREIQEQTILIG 102          
The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
RPOB_BUXMI2.843e-4281.37DNA-directed RNA polymerase subunit beta OS=Buxus ... [more]
RPOB_ILLOL3.713e-4279.41DNA-directed RNA polymerase subunit beta OS=Illici... [more]
RPOB_DRIGR1.080e-4181.37DNA-directed RNA polymerase subunit beta OS=Drimys... [more]
RPOB_SINAL1.411e-4178.90DNA-directed RNA polymerase subunit beta OS=Sinapi... [more]
RPOB_AMBTC1.411e-4179.41DNA-directed RNA polymerase subunit beta OS=Ambore... [more]
RPOB_ACOCL4.105e-4181.82DNA-directed RNA polymerase subunit beta OS=Acorus... [more]
RPOB_LEMMI5.361e-4178.43DNA-directed RNA polymerase subunit beta OS=Lemna ... [more]
RPOB_CALFG5.361e-4186.17DNA-directed RNA polymerase subunit beta OS=Calyca... [more]
RPOB_ACOGR5.361e-4180.81DNA-directed RNA polymerase subunit beta OS=Acorus... [more]
RPOB_SILLA1.194e-4078.43DNA-directed RNA polymerase subunit beta OS=Silene... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bp
TTCCAATAAAAATAGTTTGTTCCTGCATGTCCCCTCGGCTTTTCCAAATT
AATCCTGGGGATACATATAATTCAGAAGAATACGTGAATGATTCATATAC
AGCATCTCTTTCTTTTAGCAAGGGTTCTACCAATTGATATGTTTCCACAA
ATAATTGAAATTCAGTTTCTTGATCTGTATCTTCAATTTTTGGAAACTTA
TAAAGCTCTTCTGTTAGGCCCTGATGAATGAACCTACAAAATCCTTCAAA
TTGTATCGGATTTAACCCAGGTATTGTAGACATTCCTGCATTTCCATCTC
CGAGCATTTTGAATTTCCCATTTATCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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