CK938986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_BUXMI (DNA-directed RNA polymerase subunit beta OS=Buxus microphylla GN=rpoB PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 2.843e-42 Identity = 83/102 (81.37%), Postives = 88/102 (86.27%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 M+ DGN MSTIPG + IQFEGFCRFI QGL EELYKFPKIEDTDQE EFQLFVETYQL EPL+KERDAVYES TYSSELYV GLIWK+ +MQEQTIFIG Sbjct: 1 MIRDGNEEMSTIPGFSQIQFEGFCRFIDQGLMEELYKFPKIEDTDQEIEFQLFVETYQLAEPLIKERDAVYESLTYSSELYVPAGLIWKTSRNMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ILLOL (DNA-directed RNA polymerase subunit beta OS=Illicium oligandrum GN=rpoB PE=3 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 3.713e-42 Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GMSTIPG + IQFEGFC+FI QGL EEL+KFPK+EDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIW++ DM++QT+FIG Sbjct: 1 MLRDGNEGMSTIPGSSQIQFEGFCKFIDQGLAEELHKFPKMEDTDQEMEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWRAGRDMRKQTVFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_DRIGR (DNA-directed RNA polymerase subunit beta OS=Drimys granadensis GN=rpoB PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.080e-41 Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GM TIPG + IQFEGF RFI QGLTEEL+KFPKIEDTDQE EFQLFV+TY+LVEPL+KERDAVYES TYSSELYV GLIWK+ DMQEQTIFIG Sbjct: 1 MLRDGNEGMFTIPGFSQIQFEGFFRFIDQGLTEELHKFPKIEDTDQEIEFQLFVDTYRLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SINAL (DNA-directed RNA polymerase subunit beta OS=Sinapis alba GN=rpoB PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 1.411e-41 Identity = 86/109 (78.90%), Postives = 90/109 (82.57%), Query Frame = -1 Query: 2 LINGKFKMLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 328 +IN K KMLGDG G STIPG N IQFEGF RFI QGL EEL KFPKIED D E EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ +MQEQ IFIG Sbjct: 1 MINAK-KMLGDGKEGTSTIPGFNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTNRNMQEQRIFIG 108
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_AMBTC (DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda GN=rpoB PE=3 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 1.411e-41 Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GMSTIPG + IQFEGFCRF+ QGL EEL+KFPKIEDTDQE EFQL VETYQL EPL+KERDAVYES T+SSELYV GLIWK DMQEQT+FIG Sbjct: 1 MLRDGNEGMSTIPGFSQIQFEGFCRFVDQGLAEELHKFPKIEDTDQEIEFQLLVETYQLAEPLIKERDAVYESLTHSSELYVPAGLIWKVGRDMQEQTVFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ACOCL (DNA-directed RNA polymerase subunit beta OS=Acorus calamus GN=rpoB PE=3 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 4.105e-41 Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = -1 Query: 2 DGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 298 DGN GM TIPG + IQFEGFCRFI QGL EE +KFPKIEDTDQE EFQLFVE YQLVEPL+KERDAVYES TYSSELYV GLIWK+ DMQEQTIFIG Sbjct: 4 DGNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_LEMMI (DNA-directed RNA polymerase subunit beta OS=Lemna minor GN=rpoB PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41 Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML DGN GM TIPG + IQFEGFCRFI+QGL EE KFPKIEDTDQE EF+LFVETYQL EPL+KERDAVYES TYSSELYV GLIWK+ DM+EQT+FIG Sbjct: 1 MLRDGNEGMFTIPGFSQIQFEGFCRFINQGLMEEFNKFPKIEDTDQEIEFKLFVETYQLAEPLIKERDAVYESLTYSSELYVLAGLIWKTNRDMKEQTVFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CALFG (DNA-directed RNA polymerase subunit beta OS=Calycanthus floridus var. glaucus GN=rpoB PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41 Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = -1 Query: 2 MSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 283 M TIPG + IQFEGFCRFI QGLTEEL+KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MPTIPGFSQIQFEGFCRFIDQGLTEELHKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTGRDMQEQTIFIG 94
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ACOGR (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus GN=rpoB PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 5.361e-41 Identity = 80/99 (80.81%), Postives = 85/99 (85.86%), Query Frame = -1 Query: 2 DGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 298 DGN GM TIPG + IQFEGFCRF+ QGL EE +KFPKIEDTDQE EFQLFVE YQLVEPL+KERDAVYES TYSSELYV GLIWK+ DMQEQTIFIG Sbjct: 4 DGNEGMFTIPGFSQIQFEGFCRFVDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLIKERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia GN=rpoB PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.194e-40 Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 ML +GN MSTIPG N IQFEGFC+FI QGL EELYKFPKIEDTDQE EFQLFVETYQLVEP++KE+DAVY+S TYSSELYVS GLIWK+ ++QEQTI IG Sbjct: 1 MLREGNELMSTIPGFNQIQFEGFCQFIDQGLPEELYKFPKIEDTDQEIEFQLFVETYQLVEPVIKEKDAVYKSLTYSSELYVSAGLIWKTGREIQEQTILIG 102 The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bpback to top |