CK938973

Overview
NameCK938973
Unique NameCK938973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  320 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 475
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  320 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 475
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   98 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 319
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  320 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 475
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSN  RPKKK+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   98 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 319
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   98 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 319
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   98 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 319
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  320 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 475
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   92 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 319
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of CK938973 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.746e-20
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  323 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 472
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKK+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50          
The following BLAST results are available for this feature:
BLAST of CK938973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_CANFA7.322e-2186.5460S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN7.322e-2186.5460S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RUB1_DESAN2.130e-2064.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RL40_ACACA2.130e-2082.6960S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RUB2_ORYSJ2.783e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.783e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.783e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RL40_DROME2.783e-2084.6260S ribosomal protein L40 OS=Drosophila melanogast... [more]
NEDD8_DROME3.634e-2059.21NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RL40_DICDI4.746e-2088.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_H05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938973 ID=CK938973; Name=CK938973; organism=Citrus sinensis; type=EST; length=729bp
GGGGTAATAAACAAATNNNNAAATCGGCTAGTTGCAAACGAGCTAGAGAG
AGAGAGAGAGAGCGAGAGGAAAAGGAGAAAAGGGGAAAAAAATGCAGATC
TTCGTGAAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAATCCAG
CGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTC
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGAGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTACAC
AAAAAAAAAAAANAAAAAAANNNAAAAAA
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