CK938966
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.386e-53 Identity = 110/227 (48.46%), Postives = 137/227 (60.35%), Query Frame = 3 Query: 129 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740 M +D NPF+E++VNPFS A VPSV+S EP FG ATVDIPLD+ + K +E+EL + EA+L A +AG+ +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+ CL +NVIAV W+KG GVKI+ LA IY + GVP +YVLWYRPLY AMRTDSALKF FFL Y HI C Sbjct: 1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFC 223
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 9.771e-53 Identity = 109/227 (48.02%), Postives = 137/227 (60.35%), Query Frame = 3 Query: 129 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740 M +D NPF+E++VNPFS A VPS++S EP FG ATVDIPLD+ + K +E+EL + EA+L A +AG+ +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+ CL +NVIAV W+KG GVKI+ LA IY + GVP +YVLWYRPLY AMRTDSALKF FFL Y HI C Sbjct: 1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFC 223
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.667e-52 Identity = 107/222 (48.20%), Postives = 134/222 (60.36%), Query Frame = 3 Query: 150 NPFDE---EEVNPFSN-----GPAAPAS-----------RSQVPSVTS------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740 NPF+E +EVNPF++ G A +S R P T EP F + VDIP+D + K +E+EL + EA+L A +AG+ +D+NWPPFFPIIH+DI EIP+H QR QY+AFAS G+VLCL +N+I V WIKG G KI+FLA IY +LG P +Y LWYRPLYRAMR +SALKF WFFLFY +HI C Sbjct: 9 NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFC 230
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_MOUSE (Secretory carrier-associated membrane protein 3 OS=Mus musculus GN=Scamp3 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14 Identity = 64/215 (29.77%), Postives = 88/215 (40.93%), Query Frame = 3 Query: 150 NPFDEEEVNPFSNGPA---APASRSQVPSVTS-------EPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725 NPF+ E P PA AP PSV S EP +G AT ++ L E +K EL E +L + G T NWPP P DIS EIP Q+ + W L L+ N A + + + G F L+ ++ LL P S+V WYRP+Y+A R+DS+ F FF +++ Sbjct: 42 NPFENREPPPAYEPPAPAPAPLPPPSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQH-----------VALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFFACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFV 244
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_HUMAN (Secretory carrier-associated membrane protein 3 OS=Homo sapiens GN=SCAMP3 PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13 Identity = 63/216 (29.17%), Postives = 88/216 (40.74%), Query Frame = 3 Query: 150 NPFDEEEVNPFSNGPA-APASRSQVPSVT-------SEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWI----KGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725 NPF+ E P PA AP PS+ +EP +G AT ++ L E +K EL E +L G T NWPP P DIS EIP Q+ + W L L+ N +A + + G G F L+ ++ LL P S+V WYRP+Y+A R+DS+ F FF +++ Sbjct: 42 NPFETREPPPAYEPPAPAPLPPPSAPSLQPSRKLSPTEPKNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETNNGAG---FGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFV 242
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_MOUSE (Secretory carrier-associated membrane protein 4 OS=Mus musculus GN=Scamp4 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13 Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 3 Query: 426 PPFFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719 PPF P+ + D S EIP+ Q L + W L N++A + WI GG F LA ++ +L P SYV W+RP Y+A R DS+ F FF + Sbjct: 12 PPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIF 112
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_PONAB (Secretory carrier-associated membrane protein 4 OS=Pongo abelii GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13 Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 3 Query: 414 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719 + N+PP F P+ + + S EIP+ Q L + W L N+IA + WI GG F LA ++ LL P SYV W+RP+Y+A R DS+ F FF + Sbjct: 5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCSYVCWFRPVYKAFRADSSFNFMAFFFIF 112
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_RAT (Secretory carrier-associated membrane protein 4 OS=Rattus norvegicus GN=Scamp4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12 Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 3 Query: 429 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719 P P + D S EIP+ Q L + W L N++A + WI GG F LA ++ +L P SYV W+RP Y+A R DS+ F FF + Sbjct: 16 PLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCTTLGVNLVACLAWWIAGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIF 112
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_BOVIN (Secretory carrier-associated membrane protein 3 OS=Bos taurus GN=SCAMP3 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 59/213 (27.70%), Postives = 86/213 (40.38%), Query Frame = 3 Query: 150 NPFDEEEVNPFSNGPA--------APASRSQVPSVTSEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725 NPF+ E P PA AP +S +EP +G AT ++ L E +K EL E +L T NWPP P DIS EIP Q+ + W L L+ N +A + + ++ F L+ ++ LL P S+V WYRP+Y+A R+DS+ F FF +++ Sbjct: 42 NPFETREPPPSYEPPAPVPIAPPSAPPLQSSRKLSPTEPKNYGSYSTQASTAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSSNFFVFFFIFFV 242
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_HUMAN (Secretory carrier-associated membrane protein 4 OS=Homo sapiens GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12 Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 3 Query: 414 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719 + N+PP F P+ + + S EIP+ Q L + W L N+IA + WI GG F LA ++ LL P YV W+RP+Y+A R DS+ F FF + Sbjct: 5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIF 112 The following BLAST results are available for this feature:
BLAST of CK938966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938966 ID=CK938966; Name=CK938966; organism=Citrus sinensis; type=EST; length=741bpback to top |