CK938966

Overview
NameCK938966
Unique NameCK938966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938966_ssr314 microsatellite CK938966_ssr314:314..323. BLAST: Citrus ESTs to Prunus persica proteins V1
CK938966_ssr83 microsatellite CK938966_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSJ (Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.386e-53
Identity = 110/227 (48.46%), Postives = 137/227 (60.35%), Query Frame = 3
Query:  129 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +D NPF+E++VNPFS      A                  VPSV+S         EP  FG    ATVDIPLD+  + K +E+EL + EA+L            A  +AG+  +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ LA IY + GVP +YVLWYRPLY AMRTDSALKF  FFL Y  HI  C
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSVSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFC 223          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.771e-53
Identity = 109/227 (48.02%), Postives = 137/227 (60.35%), Query Frame = 3
Query:  129 MNRHHDPNPFDEEEVNPFSNGPAAPASRS--------------QVPSVTS---------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            M   +D NPF+E++VNPFS      A                  VPS++S         EP  FG    ATVDIPLD+  + K +E+EL + EA+L            A  +AG+  +++NWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV   W+KG GVKI+ LA IY + GVP +YVLWYRPLY AMRTDSALKF  FFL Y  HI  C
Sbjct:    1 MAGRYDSNPFEEDDVNPFSEQARGKAGGQPSYGGGAFYMPNPRNVPSMSSNSRLSPLPPEPAAFG----ATVDIPLDSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAVTSAWVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFC 223          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.667e-52
Identity = 107/222 (48.20%), Postives = 134/222 (60.36%), Query Frame = 3
Query:  150 NPFDE---EEVNPFSN-----GPAAPAS-----------RSQVPSVTS------EPIGFGQKYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWIHIXXC 740
            NPF+E   +EVNPF++     G A  +S           R   P  T       EP  F   +   VDIP+D   + K +E+EL + EA+L            A  +AG+  +D+NWPPFFPIIH+DI  EIP+H QR QY+AFAS  G+VLCL +N+I V   WIKG G KI+FLA IY +LG P +Y LWYRPLYRAMR +SALKF WFFLFY +HI  C
Sbjct:    9 NPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFC 230          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_MOUSE (Secretory carrier-associated membrane protein 3 OS=Mus musculus GN=Scamp3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 64/215 (29.77%), Postives = 88/215 (40.93%), Query Frame = 3
Query:  150 NPFDEEEVNPFSNGPA---APASRSQVPSVTS-------EPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725
            NPF+  E  P    PA   AP      PSV S       EP  +G          AT ++ L    E  +K  EL   E +L             +   G  T   NWPP        P    DIS EIP   Q+     +  W    L L+ N  A +  + +  G    F L+ ++ LL  P S+V WYRP+Y+A R+DS+  F  FF  +++
Sbjct:   42 NPFENREPPPAYEPPAPAPAPLPPPSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQH-----------VALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFFACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFV 244          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_HUMAN (Secretory carrier-associated membrane protein 3 OS=Homo sapiens GN=SCAMP3 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 63/216 (29.17%), Postives = 88/216 (40.74%), Query Frame = 3
Query:  150 NPFDEEEVNPFSNGPA-APASRSQVPSVT-------SEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWI----KGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725
            NPF+  E  P    PA AP      PS+        +EP  +G          AT ++ L    E  +K  EL   E +L                 G  T   NWPP        P    DIS EIP   Q+     +  W    L L+ N +A +  +      G G   F L+ ++ LL  P S+V WYRP+Y+A R+DS+  F  FF  +++
Sbjct:   42 NPFETREPPPAYEPPAPAPLPPPSAPSLQPSRKLSPTEPKNYGSYSTQASAAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETNNGAG---FGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFV 242          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_MOUSE (Secretory carrier-associated membrane protein 4 OS=Mus musculus GN=Scamp4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 3
Query:  426 PPFFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719
            PPF P+    + D S EIP+  Q L    +  W      L  N++A +  WI GG    F LA ++ +L  P SYV W+RP Y+A R DS+  F  FF  +
Sbjct:   12 PPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIF 112          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_PONAB (Secretory carrier-associated membrane protein 4 OS=Pongo abelii GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 3
Query:  414 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719
            + N+PP   F P+    + + S EIP+  Q L    +  W      L  N+IA +  WI GG    F LA ++ LL  P SYV W+RP+Y+A R DS+  F  FF  +
Sbjct:    5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCSYVCWFRPVYKAFRADSSFNFMAFFFIF 112          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_RAT (Secretory carrier-associated membrane protein 4 OS=Rattus norvegicus GN=Scamp4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 3
Query:  429 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719
            P  P  + D S EIP+  Q L    +  W      L  N++A +  WI GG    F LA ++ +L  P SYV W+RP Y+A R DS+  F  FF  +
Sbjct:   16 PLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCTTLGVNLVACLAWWIAGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIF 112          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM3_BOVIN (Secretory carrier-associated membrane protein 3 OS=Bos taurus GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 59/213 (27.70%), Postives = 86/213 (40.38%), Query Frame = 3
Query:  150 NPFDEEEVNPFSNGPA--------APASRSQVPSVTSEPIGFGQ------KYGATVDIPLDNMNEPKKKERELASWEADLXXXXXXXXXXXXAIVKAGVPTDDRNWPPF------FPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCW-IKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYWI 725
            NPF+  E  P    PA        AP  +S      +EP  +G          AT ++ L    E  +K  EL   E +L                    T   NWPP        P    DIS EIP   Q+     +  W    L L+ N +A +  + ++      F L+ ++ LL  P S+V WYRP+Y+A R+DS+  F  FF  +++
Sbjct:   42 NPFETREPPPSYEPPAPVPIAPPSAPPLQSSRKLSPTEPKNYGSYSTQASTAAATAEL-LKKQEELNRKAEELDRRERELQHAAL-----------GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSSNFFVFFFIFFV 242          
BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_HUMAN (Secretory carrier-associated membrane protein 4 OS=Homo sapiens GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 3
Query:  414 DRNWPP---FFPI---IHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719
            + N+PP   F P+    + + S EIP+  Q L    +  W      L  N+IA +  WI GG    F LA ++ LL  P  YV W+RP+Y+A R DS+  F  FF  +
Sbjct:    5 ENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIF 112          
The following BLAST results are available for this feature:
BLAST of CK938966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCAM1_ORYSJ4.386e-5348.46Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_ORYSI9.771e-5348.02Putative secretory carrier-associated membrane pro... [more]
SCAM4_ORYSJ1.667e-5248.20Secretory carrier-associated membrane protein 4 OS... [more]
SCAM3_MOUSE1.801e-1429.77Secretory carrier-associated membrane protein 3 OS... [more]
SCAM3_HUMAN1.525e-1329.17Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_MOUSE2.601e-1337.62Secretory carrier-associated membrane protein 4 OS... [more]
SCAM4_PONAB9.885e-1337.04Secretory carrier-associated membrane protein 4 OS... [more]
SCAM4_RAT1.291e-1237.11Secretory carrier-associated membrane protein 4 OS... [more]
SCAM3_BOVIN2.202e-1227.70Secretory carrier-associated membrane protein 3 OS... [more]
SCAM4_HUMAN2.876e-1236.11Secretory carrier-associated membrane protein 4 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938966 ID=CK938966; Name=CK938966; organism=Citrus sinensis; type=EST; length=741bp
GGGGACAGCACCGCACGGCACCAGCAGCAACTAATAGCAGTGTTAGTGAA
TTTGCGAAGTTAGGTGCAAAATTTAGGGATCTGAAAGAAAGAAAAAAACC
AAAAAAAAAGAAGAAAAAACACGAATCAATGAATCGCCACCACGACCCAA
ATCCCTTCGATGAAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCT
CCTGCATCAAGGTCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATT
TGGACAGAAATATGGGGCGACAGTTGATATTCCACTAGATAATATGAACG
AGCCTAAGAAAAAAGAGAGAGAGCTTGCATCATGGGAAGCAGATCTTAAA
AGGAGGGAAAAGGAAATAAAACGAAGAGAAGAGGCTATTGTCAAAGCTGG
CGTTCCCACAGACGATAGAAATTGGCCACCTTTTTTTCCAATTATTCATC
ATGACATATCGAAGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTT
GCTTTTGCTAGTTGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAAT
TGCCGTGATTGTCTGTTGGATTAAAGGCGGTGGTGTCAAAATCTTTTTCC
TTGCAACAATTTATGCTTTGCTTGGAGTGCCTATGTCATATGTTCTATGG
TACAGGCCTCTTTATCGAGCAATGAGGACGGATAGTGCATTGAAGTTCAG
CTGGTTTTTCCTGTTCTACTGGATCCACATCGNNNTTTGTA
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