CK938966

Overview
NameCK938966
Unique NameCK938966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938966 vs. ExPASy Swiss-Prot
Match: SCAM4_BOVIN (Secretory carrier-associated membrane protein 4 OS=Bos taurus GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 3 
Query:  429 PFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAVIVCWIKGGGVKIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFY 719
            P  P  + + S EIPI  Q L    +  W      L  N++A +  WI GG    F LA ++ LL  P  YV W+RP Y+A R+DS+  F  FF  +
Sbjct:   16 PLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCATLGVNLVACLAWWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIF 112
The following BLAST results are available for this feature:
BLAST of CK938966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SCAM4_BOVIN6.407e-1237.11Secretory carrier-associated membrane protein 4 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938966 ID=CK938966; Name=CK938966; organism=Citrus sinensis; type=EST; length=741bp
GGGGACAGCACCGCACGGCACCAGCAGCAACTAATAGCAGTGTTAGTGAA
TTTGCGAAGTTAGGTGCAAAATTTAGGGATCTGAAAGAAAGAAAAAAACC
AAAAAAAAAGAAGAAAAAACACGAATCAATGAATCGCCACCACGACCCAA
ATCCCTTCGATGAAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCT
CCTGCATCAAGGTCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATT
TGGACAGAAATATGGGGCGACAGTTGATATTCCACTAGATAATATGAACG
AGCCTAAGAAAAAAGAGAGAGAGCTTGCATCATGGGAAGCAGATCTTAAA
AGGAGGGAAAAGGAAATAAAACGAAGAGAAGAGGCTATTGTCAAAGCTGG
CGTTCCCACAGACGATAGAAATTGGCCACCTTTTTTTCCAATTATTCATC
ATGACATATCGAAGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTT
GCTTTTGCTAGTTGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAAT
TGCCGTGATTGTCTGTTGGATTAAAGGCGGTGGTGTCAAAATCTTTTTCC
TTGCAACAATTTATGCTTTGCTTGGAGTGCCTATGTCATATGTTCTATGG
TACAGGCCTCTTTATCGAGCAATGAGGACGGATAGTGCATTGAAGTTCAG
CTGGTTTTTCCTGTTCTACTGGATCCACATCGNNNTTTGTA
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