CK938961

Overview
NameCK938961
Unique NameCK938961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3956 contig Csv1_Contig3956:565..1437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.806e-29
Identity = 92/256 (35.94%), Postives = 126/256 (49.22%), Query Frame = 1
Query:   94 PRLDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPL-VRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPF 858
            P  DL Q +       +    +    L+R+ E  VS SG+PI+R+G Y  E L  +   S S           +   ++SY + L   CPY KFA+++AN  I EA    + IHI+DF I QG QW  LL ALA R  G P  +RI+GI       + G  L   G RL +FAA  ++ FEF         +     RV P E +VVNF   L+ + DE+ +T       LRL +SL+P++VTL E E   N   F
Sbjct:  169 PDFDLNQPIFKAIHDYARKPETKPDTLIRIKES-VSESGDPIQRVGYYFAEALSHKETESPSS-----SSSSSLEDFILSYKT-LNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVG---TALRLARSLNPRIVTLGEYEVSLNRVEF 414          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.904e-29
Identity = 83/257 (32.30%), Postives = 134/257 (52.14%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLF-QICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            L   L+ CA+AV   ++  A  L++ +  +       + ++  Y  EGL  R       IY+ L  ++P+ S     + + F + CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA RPGG P  R+TGI    + +     L  VG +L++ A + +V FE++   A +  +++   L ++ GE+V VN  F LH +    ++     +R+L  VK + P +VT+VE E+  N   F   F
Sbjct:  214 LVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARR-------IYR-LYPDKPLDSSFSDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNT--DHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSL----LARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRF 456          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 90/252 (35.71%), Postives = 123/252 (48.81%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPL-VRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPF 858
            L + +  CA+ +SD D + A+  +  + + VS  G+P ER+  Y  E L  RL    S    A       + +L+     L   CPY KFA+++AN  I EA E  + IHI+DF I QG QW  LL ALA R  G P  +R++GI       +    L   G RL +FA   ++ F+F         +     RV P E + VNF   L+ + DE   T    D  LRL KSL+P+VVTL E E   N   F
Sbjct:  217 LLKAIYDCAR-ISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRL----SPNSPATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDE---TPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGF 460          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-28
Identity = 88/262 (33.59%), Postives = 133/262 (50.76%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVL----FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            L   L+ CA+AV   +++ A  L+R +  +       + ++  Y  E L  R+     KIY       P  S   SY  VL    ++ CPY KFA+ +AN  I EA    + +H+IDF + QG QW  L+ ALA RPGG P  R+TGI   Q  +     L  VG +L++ A +  V FEF+   A +  +++   L ++P   EAV +N  F LH +    +S     +++L  +K ++PK+VTLVE E+  N   F   F
Sbjct:  199 LVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIY----KIY-------PQDSMESSYTDVLQMHFYETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNT--DALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRL----LSRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRF 443          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.206e-28
Identity = 87/265 (32.83%), Postives = 141/265 (53.21%), Query Frame = 1
Query:  109 KQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEH----IIHIIDFQIAQGTQWMFLLHALAKRPGG------SPLVRITGIDDS-QSTHARGGG---LDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPF 858
            +Q ++  A A+++G    A  ++  + Q  ++     E+L  +M+  LR+R+    +++Y     E  +S++L      L+++ P +K  + +AN+ I +A +N      I H+IDF I +G Q++ LL  L+ R  G      SP+V+IT + ++        GG   L  VG  LS+      +   F   T++   ++ R+ L   P E + VN  F L+ +PDESV TEN RD LLR VK L P+VVTLVE E  +NT+PF
Sbjct:  266 RQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRIASPVTELYGK---EHLISTQL------LYELSPCFKLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPF 521          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.186e-27
Identity = 85/262 (32.44%), Postives = 134/262 (51.15%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELM-SYMSVL----FQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQP-GEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            L   L+ CA+A+   +++ A  L++ +  +       + ++  Y  + L  R       IY+    E  V + +  S+  VL    ++ CPY KFA+ +AN  I EAV     +H+ID  + QG QW  L+ ALA RPGG P  R+TGI   Q+ ++    L  +G +L++FA +  V FEF+   A +  ++E +    +P  E +VVN  F LH +   S S E    +LL  VK++ P +VT+VE E+  N   F   F
Sbjct:  180 LVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARR-------IYRDYTAETDVCAAVNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENS--DSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIE----KLLNTVKAIKPSIVTVVEQEANHNGIVFLDRF 428          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.186e-27
Identity = 81/261 (31.03%), Postives = 138/261 (52.87%), Query Frame = 1
Query:  100 LDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLF-QICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            + L   L+ CA+AV   +++ A  L++ ++ +       + ++  +  E L  R       IY+ L  E P+   ++  + + F + CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA RP G P  R+TGI      ++    L  VG +L +FA + +V FE++   A +  +++   L ++P   E+VVVN  F LH +    ++     +++L +VK + P++VT+VE E+  N   F   F
Sbjct:  209 IQLVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARR-------IYR-LCPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNS--DYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQL----LARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERF 455          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.270e-27
Identity = 80/259 (30.89%), Postives = 132/259 (50.97%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLF-QICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            L   L+ CA+AV   +++ A  L++ +  +       + ++  Y  E L  R       IY+    + P+   L   + + F + CPY KFA+ +AN  I EA + +  +H+IDF ++QG QW  L+ ALA RPGG P+ R+TGI      +     L  VG +L+  A + +V FE++   A T  +++   L ++P   E+V VN  F LH +    +      D++L +V  + P++ T+VE ES  N+  F   F
Sbjct:  169 LVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARR-------IYRLSPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNF--DYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRF 414          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.211e-26
Identity = 81/259 (31.27%), Postives = 132/259 (50.97%), Query Frame = 1
Query:  106 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPVSSELMSYMSVLF-QICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQD-TAMTACEVERQHLRVQPG--EAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVETESKTNTSPFFXXF 870
            L   L+ CA+A+ + D+S A  L++ +  +       + ++  Y  E L  R       IY+    +  +   L   + + F + CPY KFA+ +AN  I EA E +  +H+IDF + QG QW  L+ ALA R GG P+ R+TGI    + ++    L  VG +L++ A + +V FE++   A +  +++   L ++P   EAV VN  F LH +   +   E    ++L +VK + P + T+VE ES  N   F   F
Sbjct:  214 LVHALMACAEAIQNNDLSIAEALVKQIGFLAVSQAGAMRKVATYFAEALARR-------IYRLSPPQTQIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRF 459          
BLAST of CK938961 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.847e-26
Identity = 77/260 (29.62%), Postives = 133/260 (51.15%), Query Frame = 1
Query:  100 LDLKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFS-GSKI---YKALKCEQPVSSELMSYMSVLFQICPYWKFAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSTHARGGGLDIVGKRLSEFAASCNVPFEFQDTAMTACE-VERQHLRVQPGEAVVVNFPFVLHHMPDESVSTEN-HRDRLLRLVKSLSPKVVTLVETESKTNTSPFF 861
            +D + +L  CAQ+VS GD  TA  L+R + +  S  G+  +RL  +    L ARLE S G+ I   Y ++  ++  +++++   SV     P+    Y  +N +I +A ++  ++HI+DF I  G QW   +  L+K   G   +RITGI+  Q        +   G+RL+E+     VPFE+   A    E ++ +  +++P E + VN      ++ D     E+  RD  L+L++ ++P V  L  T + +  +PFF
Sbjct:  280 VDFRTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASVLHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEEDCPRDGFLKLIRDMNPNVF-LSSTVNGSFNAPFF 538          
The following BLAST results are available for this feature:
BLAST of CK938961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SCL7_ARATH5.806e-2935.94Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
GAI1_VITVI9.904e-2932.30DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
SCL4_ARATH1.293e-2835.71Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
GAI_SOLLC1.293e-2833.59DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SCL8_ARATH2.206e-2832.83Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
RGL2_ARATH3.186e-2732.44DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
GAIP_CUCMA3.186e-2731.03DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
GAI_ARATH9.270e-2730.89DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
RGA2_BRACM1.211e-2631.27DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL31_ARATH7.847e-2629.62Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_A03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938961 ID=CK938961; Name=CK938961; organism=Citrus sinensis; type=EST; length=873bp
GGGATTGACAGCNNNAGCTGTTGCTTTAAGAGTGGCACCCACCAAGACAC
TTCTGCAGCAAGTTGGAACTGGGATCAGCTGATGGAAATGATCCCCAGAC
TGGACTTGAAACAGGTGCTGATTTTCTGTGCTCAAGCCGTATCTGATGGT
GATATATCAACTGCAGCAGGTTTAATGCGCGTGTTGGAGCAAATGGTATC
AGTCTCTGGGGAGCCAATTGAACGGCTGGGTGCGTACATGTTGGAAGGGC
TTAGAGCAAGGTTGGAGTTTTCAGGGAGTAAAATCTACAAAGCCTTGAAG
TGTGAACAACCAGTGAGCTCAGAGCTGATGTCTTACATGAGTGTACTCTT
TCAGATTTGTCCATATTGGAAGTTTGCTTACATGTCAGCAAATGTCGTCA
TTGGGGAAGCAGTGGAGAATGAACATATAATTCACATCATTGATTTCCAG
ATTGCTCAGGGCACCCAGTGGATGTTCCTCCTCCATGCTCTTGCAAAACG
GCCTGGTGGATCCCCACTTGTCCGCATAACTGGGATTGATGATTCCCAAT
CAACCCATGCTCGTGGTGGAGGACTTGATATTGTAGGGAAGAGACTGTCG
GAGTTTGCTGCATCCTGCAATGTCCCATTTGAATTCCAAGATACTGCCAT
GACTGCTTGTGAGGTTGAACGACAACATCTAAGGGTTCAACCTGGGGAAG
CTGTGGTGGTGAATTTTCCTTTTGTGCTGCACCACATGCCTGATGAGAGT
GTGAGTACTGAGAATCATAGAGACAGGCTATTGAGACTGGTTAAAAGCTT
GTCACCCAAAGTTGTGACCCTTGTTGAAACAGAATCCAAAACCAATACAT
CTCCATTCTTTCNNNGGTTCCTT
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