CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_DRANE (30S ribosomal protein S12, chloroplastic OS=Draba nemorosa GN=rps12 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_DAUCA (30S ribosomal protein S12, chloroplastic OS=Daucus carota GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CUCSA (30S ribosomal protein S12, chloroplastic OS=Cucumis sativus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CRUWA (30S ribosomal protein S12, chloroplastic OS=Crucihimalaya wallichii GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_COFAR (30S ribosomal protein S12, chloroplastic OS=Coffea arabica GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CHLSC (30S ribosomal protein S12, chloroplastic OS=Chloranthus spicatus GN=rps12 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CAPBU (30S ribosomal protein S12, chloroplastic OS=Capsella bursa-pastoris GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CALFG (30S ribosomal protein S12, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_BUXMI (30S ribosomal protein S12, chloroplastic OS=Buxus microphylla GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_BARVE (30S ribosomal protein S12, chloroplastic OS=Barbarea verna GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_DRANE2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Draba ... [more]
RR12_DAUCA2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Daucus... [more]
RR12_CUCSA2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Cucumi... [more]
RR12_CRUWA2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Crucih... [more]
RR12_COFAR2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Coffea... [more]
RR12_CHLSC2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Chlora... [more]
RR12_CAPBU2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Capsel... [more]
RR12_CALFG2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Calyca... [more]
RR12_BUXMI2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Buxus ... [more]
RR12_BARVE2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Barbar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top