CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ARATH (30S ribosomal protein S12, chloroplastic OS=Arabidopsis thaliana GN=rps12-A PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_AMBTC (30S ribosomal protein S12, chloroplastic OS=Amborella trichopoda GN=rps12 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_AETGR (30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflora GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_AETCO (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ACOCL (30S ribosomal protein S12, chloroplastic OS=Acorus calamus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12B_OLIPU (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila GN=rps12-B PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12A_OLIPU (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PLAOC (30S ribosomal protein S12, chloroplastic OS=Platanus occidentalis GN=rps12-A PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.886e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQP+RNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPVRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SOYBN (30S ribosomal protein S12, chloroplastic OS=Glycine max GN=rps12-A PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTMKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_RANMC (30S ribosomal protein S12, chloroplastic OS=Ranunculus macranthus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPI+NVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_ARATH2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Arabid... [more]
RR12_AMBTC2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Ambore... [more]
RR12_AETGR2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Aethio... [more]
RR12_AETCO2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Aethio... [more]
RR12_ACOCL2.975e-1597.3730S ribosomal protein S12, chloroplastic OS=Acorus... [more]
RR12B_OLIPU2.975e-1597.3730S ribosomal protein S12-B, chloroplastic OS=Olim... [more]
RR12A_OLIPU2.975e-1597.3730S ribosomal protein S12-A, chloroplastic OS=Olim... [more]
RR12_PLAOC3.886e-1594.7430S ribosomal protein S12, chloroplastic OS=Platan... [more]
RR12_SOYBN6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Glycin... [more]
RR12_RANMC6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Ranunc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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