CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_NYMAL (30S ribosomal protein S12, chloroplastic OS=Nymphaea alba GN=rps12-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQP+RNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPMRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_NUPAD (30S ribosomal protein S12, chloroplastic OS=Nuphar advena GN=rps12-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQP+RNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPMRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_MORIN (30S ribosomal protein S12, chloroplastic OS=Morus indica GN=rps12-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPI+NVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_DRIGR (30S ribosomal protein S12, chloroplastic OS=Drimys granadensis GN=rps12-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.628e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPI+NVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ATRBE (30S ribosomal protein S12, chloroplastic OS=Atropa belladonna GN=rps12-A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI QLIRN RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTINQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_NANDO (30S ribosomal protein S12, chloroplastic OS=Nandina domestica GN=rps12-A PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPI+NVTKSPALRGCPQR+GTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRKGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_POPAL (30S ribosomal protein S12, chloroplastic OS=Populus alba GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PHAVU (30S ribosomal protein S12, chloroplastic OS=Phaseolus vulgaris GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRNVTKSPAL+GCPQRRGTCTRVY
Sbjct:    1 MPTMKQLIRNTRQPIRNVTKSPALQGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_GOSHI (30S ribosomal protein S12, chloroplastic OS=Gossypium hirsutum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNARQPIRNVTKSPALGGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_EUCGG (30S ribosomal protein S12, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps12-A PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_NYMAL6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Nympha... [more]
RR12_NUPAD6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Nuphar... [more]
RR12_MORIN6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Morus ... [more]
RR12_DRIGR6.628e-1594.7430S ribosomal protein S12, chloroplastic OS=Drimys... [more]
RR12_ATRBE1.131e-1494.7430S ribosomal protein S12, chloroplastic OS=Atropa... [more]
RR12_NANDO1.477e-1492.1130S ribosomal protein S12, chloroplastic OS=Nandin... [more]
RR12_POPAL1.929e-1494.7430S ribosomal protein S12, chloroplastic OS=Populu... [more]
RR12_PHAVU1.929e-1492.1130S ribosomal protein S12, chloroplastic OS=Phaseo... [more]
RR12_GOSHI1.929e-1494.7430S ribosomal protein S12, chloroplastic OS=Gossyp... [more]
RR12_EUCGG1.929e-1494.7430S ribosomal protein S12, chloroplastic OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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