CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12A_POPTR (30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_DIOEL (30S ribosomal protein S12, chloroplastic OS=Dioscorea elephantipes GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQ IRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQKIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ARAHI (30S ribosomal protein S12, chloroplastic OS=Arabis hirsuta GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQ IRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQQIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_LOTJA (30S ribosomal protein S12, chloroplastic OS=Lotus japonicus GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIR  RQPIRNVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTMKQLIRKTRQPIRNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ILLOL (30S ribosomal protein S12, chloroplastic OS=Illicium oligandrum GN=rps12 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVYV 202
            MPTIKQLIRN RQPI+NVTKSPALRGCPQRRGTCTRV +
Sbjct:    1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVTI 39          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CUSEU (Plastid 30S ribosomal protein S12 OS=Cuscuta europaea GN=rps12 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQPIR VTKSPALR CPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNTRQPIRKVTKSPALRSCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_EPIVI (Plastid 30S ribosomal protein S12 OS=Epifagus virginiana GN=rps12-A PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.204e-13
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIR  RQP  NVTKSPALRGCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRKKRQPNLNVTKSPALRGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_GOSBA (30S ribosomal protein S12, chloroplastic OS=Gossypium barbadense GN=rps12-A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTIKQLIRN RQ IRNVTKSP L GCPQRRGTCTRVY
Sbjct:    1 MPTIKQLIRNARQLIRNVTKSPTLGGCPQRRGTCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PHYPA (30S ribosomal protein S12, chloroplastic OS=Physcomitrella patens GN=rps12 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQPI N TKSPALRGCPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNRRQPIENRTKSPALRGCPQRRGVCTRVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12B_POPTR1.929e-1494.7430S ribosomal protein S12-B, chloroplastic OS=Popu... [more]
RR12A_POPTR1.929e-1494.7430S ribosomal protein S12-A, chloroplastic OS=Popu... [more]
RR12_DIOEL2.519e-1494.7430S ribosomal protein S12, chloroplastic OS=Diosco... [more]
RR12_ARAHI2.519e-1494.7430S ribosomal protein S12, chloroplastic OS=Arabis... [more]
RR12_LOTJA3.290e-1492.1130S ribosomal protein S12, chloroplastic OS=Lotus ... [more]
RR12_ILLOL3.290e-1489.7430S ribosomal protein S12, chloroplastic OS=Illici... [more]
RR12_CUSEU7.329e-1492.11Plastid 30S ribosomal protein S12 OS=Cuscuta europ... [more]
RR12_EPIVI6.204e-1389.47Plastid 30S ribosomal protein S12 OS=Epifagus virg... [more]
RR12_GOSBA8.103e-1389.4730S ribosomal protein S12, chloroplastic OS=Gossyp... [more]
RR12_PHYPA1.058e-1286.8430S ribosomal protein S12, chloroplastic OS=Physco... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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