CK938959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12B_POPTR (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14 Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12A_POPTR (30S ribosomal protein S12-A, chloroplastic OS=Populus trichocarpa GN=rps12-A PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14 Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQPIRNVTKSPAL GCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNTRQPIRNVTKSPALGGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_DIOEL (30S ribosomal protein S12, chloroplastic OS=Dioscorea elephantipes GN=rps12-A PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14 Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQ IRNVTKSPALRGCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNTRQKIRNVTKSPALRGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ARAHI (30S ribosomal protein S12, chloroplastic OS=Arabis hirsuta GN=rps12-A PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14 Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQ IRNVTKSPALRGCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNTRQQIRNVTKSPALRGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_LOTJA (30S ribosomal protein S12, chloroplastic OS=Lotus japonicus GN=rps12-A PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14 Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPT+KQLIR RQPIRNVTKSPALRGCPQRRGTCTRVY Sbjct: 1 MPTMKQLIRKTRQPIRNVTKSPALRGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ILLOL (30S ribosomal protein S12, chloroplastic OS=Illicium oligandrum GN=rps12 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14 Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVYV 202 MPTIKQLIRN RQPI+NVTKSPALRGCPQRRGTCTRV + Sbjct: 1 MPTIKQLIRNTRQPIKNVTKSPALRGCPQRRGTCTRVTI 39
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CUSEU (Plastid 30S ribosomal protein S12 OS=Cuscuta europaea GN=rps12 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.329e-14 Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQPIR VTKSPALR CPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNTRQPIRKVTKSPALRSCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_EPIVI (Plastid 30S ribosomal protein S12 OS=Epifagus virginiana GN=rps12-A PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.204e-13 Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIR RQP NVTKSPALRGCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRKKRQPNLNVTKSPALRGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_GOSBA (30S ribosomal protein S12, chloroplastic OS=Gossypium barbadense GN=rps12-A PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.103e-13 Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTIKQLIRN RQ IRNVTKSP L GCPQRRGTCTRVY Sbjct: 1 MPTIKQLIRNARQLIRNVTKSPTLGGCPQRRGTCTRVY 38
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PHYPA (30S ribosomal protein S12, chloroplastic OS=Physcomitrella patens GN=rps12 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12 Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 2 Query: 86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199 MPTI+QLIRN RQPI N TKSPALRGCPQRRG CTRVY Sbjct: 1 MPTIQQLIRNRRQPIENRTKSPALRGCPQRRGVCTRVY 38 The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bpback to top |