CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_MARPO (30S ribosomal protein S12, chloroplastic OS=Marchantia polymorpha GN=rps12 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQPI N TKSPAL+GCPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNKRQPIENRTKSPALKGCPQRRGVCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_HUPLU (30S ribosomal protein S12, chloroplastic OS=Huperzia lucidula GN=rps12 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.079e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQP+ N TKSPAL+GCPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNQRQPVENRTKSPALQGCPQRRGVCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SORBI (30S ribosomal protein S12, chloroplastic OS=Sorghum bicolor GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SACOF (30S ribosomal protein S12, chloroplastic OS=Saccharum officinarum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_SACHY (30S ribosomal protein S12, chloroplastic OS=Saccharum hybrid GN=rps12 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PSINU (30S ribosomal protein S12, chloroplastic OS=Psilotum nudum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQPIR+ TKSPALRGCPQRRG C RVY
Sbjct:    1 MPTIQQLIRNARQPIRSRTKSPALRGCPQRRGVCIRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ORYSJ (30S ribosomal protein S12, chloroplastic OS=Oryza sativa subsp. japonica GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ORYSI (30S ribosomal protein S12, chloroplastic OS=Oryza sativa subsp. indica GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ORYSA (30S ribosomal protein S12, chloroplastic OS=Oryza sativa GN=rps12-A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ORYNI (30S ribosomal protein S12, chloroplastic OS=Oryza nivara GN=rps12 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_MARPO1.805e-1284.2130S ribosomal protein S12, chloroplastic OS=Marcha... [more]
RR12_HUPLU3.079e-1281.5830S ribosomal protein S12, chloroplastic OS=Huperz... [more]
RR12_SORBI4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Sorghu... [more]
RR12_SACOF4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Saccha... [more]
RR12_SACHY4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Saccha... [more]
RR12_PSINU4.021e-1284.2130S ribosomal protein S12, chloroplastic OS=Psilot... [more]
RR12_ORYSJ4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Oryza ... [more]
RR12_ORYSI4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Oryza ... [more]
RR12_ORYSA4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Oryza ... [more]
RR12_ORYNI4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top