CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_MAIZE (30S ribosomal protein S12, chloroplastic OS=Zea mays GN=rps12-A PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.021e-12
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  KS AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKSAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_JASNU (30S ribosomal protein S12, chloroplastic OS=Jasminum nudiflorum GN=rps12-A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI QLIRN RQ IRNV KSPAL+GCPQRRG CTRVY
Sbjct:    1 MPTINQLIRNTRQSIRNVKKSPALQGCPQRRGICTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_WHEAT (30S ribosomal protein S12, chloroplastic OS=Triticum aestivum GN=rps12-A PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  K+ AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_HORVU (30S ribosomal protein S12, chloroplastic OS=Hordeum vulgare GN=rps12-A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  K+ AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_AGRST (30S ribosomal protein S12, chloroplastic OS=Agrostis stolonifera GN=rps12-A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPT+KQLIRN RQPIRN  K+ AL+GCPQRRGTC RVY
Sbjct:    1 MPTVKQLIRNARQPIRNARKTAALKGCPQRRGTCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_CHAGL (30S ribosomal protein S12, chloroplastic OS=Chaetosphaeridium globosum GN=rps12 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.170e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN R+PI N TKSPALR CPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNRREPIENRTKSPALRSCPQRRGVCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_STAPU (30S ribosomal protein S12, chloroplastic OS=Staurastrum punctulatum GN=rps12 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQP  N TKSPALR CPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNSRQPAENRTKSPALRACPQRRGVCTRVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PINTH (30S ribosomal protein S12, chloroplastic OS=Pinus thunbergii GN=rps12 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQPI N  KSPALRGCPQRRG C RVY
Sbjct:    1 MPTIQQLIRNARQPIENRKKSPALRGCPQRRGVCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_PINCO (30S ribosomal protein S12, chloroplastic (Fragment) OS=Pinus contorta GN=rps12 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQPI N  KSPALRGCPQRRG C RVY
Sbjct:    1 MPTIQQLIRNARQPIENRKKSPALRGCPQRRGVCARVY 38          
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ZYGCR (30S ribosomal protein S12, chloroplastic OS=Zygnema circumcarinatum GN=rps12 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRN RQP +N TKSPAL+ CPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNTRQPTQNRTKSPALKACPQRRGVCTRVY 38          
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_MAIZE4.021e-1281.5830S ribosomal protein S12, chloroplastic OS=Zea ma... [more]
RR12_JASNU6.859e-1284.2130S ribosomal protein S12, chloroplastic OS=Jasmin... [more]
RR12_WHEAT8.959e-1278.9530S ribosomal protein S12, chloroplastic OS=Tritic... [more]
RR12_HORVU8.959e-1278.9530S ribosomal protein S12, chloroplastic OS=Hordeu... [more]
RR12_AGRST8.959e-1278.9530S ribosomal protein S12, chloroplastic OS=Agrost... [more]
RR12_CHAGL1.170e-1181.5830S ribosomal protein S12, chloroplastic OS=Chaeto... [more]
RR12_STAPU1.528e-1181.5830S ribosomal protein S12, chloroplastic OS=Staura... [more]
RR12_PINTH1.528e-1181.5830S ribosomal protein S12, chloroplastic OS=Pinus ... [more]
RR12_PINCO1.528e-1181.5830S ribosomal protein S12, chloroplastic (Fragment... [more]
RR12_ZYGCR2.607e-1178.9530S ribosomal protein S12, chloroplastic OS=Zygnem... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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