CK938959

Overview
NameCK938959
Unique NameCK938959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RR12_ANGEV (30S ribosomal protein S12, chloroplastic OS=Angiopteris evecta GN=rps12-A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            M TI+QLIRN RQPI + TKSPALRGCPQRRG CTRVY
Sbjct:    1 MSTIQQLIRNTRQPIEDRTKSPALRGCPQRRGVCTRVY 38
[Close]
BLAST of CK938959 vs. ExPASy Swiss-Prot
Match: RS12_HYPNA (30S ribosomal protein S12 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsL PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:   86 MPTIKQLIRNPRQPIRNVTKSPALRGCPQRRGTCTRVY 199
            MPTI+QLIRNPR+P R  TK+PAL+ CPQRRG CTRVY
Sbjct:    1 MPTIQQLIRNPREPKRTRTKTPALKACPQRRGVCTRVY 38
The following BLAST results are available for this feature:
BLAST of CK938959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RR12_ANGEV2.607e-1181.5830S ribosomal protein S12, chloroplastic OS=Angiop... [more]
RS12_HYPNA4.446e-1176.3230S ribosomal protein S12 OS=Hyphomonas neptunium ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_B10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938959 ID=CK938959; Name=CK938959; organism=Citrus sinensis; type=EST; length=263bp
GGGGTTTAATATTCTATTAAACAGAAGAAATTCATAATCATCCGGTTAGG
ATCGATCTAAACCAGCCCATAATGGATAATTCAGCATGCCAACTATTAAA
CAACTTATTAGAAACCCAAGACAGCCAATTAGAAACGTTACCAAATCCCC
CGCTCTGCGGGGATGTCCTCAGCGCCGAGGAACATGTACAAGGGTGTATG
TGCGACTCGTTTCAATCATGGGCTGAGACAAACCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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