CK938947
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METST (50S ribosomal protein L30e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12 Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 402 I + + + +GK LG +++++ G+L +++ N P K++IE Y+ L+++ V+ + G++V+LG+ CGK F VS L I +PGDS+I++ Sbjct: 3 IERGIRVAVDTGKVILGSNKAIQAIKLGNGELAIMAENTPKNVKADIEAYSKLSEMPVYTFEGSSVELGSICGKPFTVSVLIIQEPGDSNILE 95
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METM5 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11 Identity = 29/92 (31.52%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 399 IN + + + +G LG K +++++ +G+L+++++NC K +I YY L++ V+ + +++LG CGK F VS L +++PG+S I+ Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVKEDIFYYTKLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 100
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_THENV (50S ribosomal protein L30e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11 Identity = 30/93 (32.26%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 402 I+ L + + +GK +G++ +++ + KL++L+ N P + +IEYYA LA V V + G++++LG A + ++ L+++DPG S+I+K Sbjct: 4 ISRELQVALNTGKVIIGFEETKKAVLAGTPKLVILAANAPKWARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILK 96
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_SULTO (50S ribosomal protein L30e OS=Sulfolobus tokodaii GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11 Identity = 28/93 (30.11%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 130 NRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 408 + L ++++GK G K ++ +++ K K++++++ K +I YA ++ + V+ YNG+ +LGT CGK F +S + +IDPG+S +++ + Sbjct: 9 SELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEI 101
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METM7 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11 Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 399 IN + + + +G LG K +++++ +G+L+++++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I+ Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 100
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METM6 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11 Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 399 IN + + + +G LG K +++++ +G+L+++++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I+ Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQSTSIELGAICGKPFPVSALLVLEPGNSAIL 100
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_PYRCJ (50S ribosomal protein L30e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11 Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 402 I L + + +GK +G + +SL + KL++++ N P + +IEYYA LA V + + G++++LG A + ++ L+++DPG S+I+K Sbjct: 4 IGRELQVAINTGKVIIGLRETKKSLLTGAPKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHKIMALAVVDPGQSEILK 96
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METMP (50S ribosomal protein L30e OS=Methanococcus maripaludis GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11 Identity = 28/92 (30.43%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDII 399 IN + + + +G LG K +++++ +G+L+++++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I+ Sbjct: 3 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAIL 94
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAE (50S ribosomal protein L30e OS=Pyrobaculum aerophilum GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11 Identity = 31/93 (33.33%), Postives = 58/93 (62.37%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 402 I+ L + + +GK +G++ ++L + KLI+L+ N P + +IEYYA LA V + + G++++LG A + ++ L++ID G S+I+K Sbjct: 4 ISRELQVAINTGKVVIGFEETKKALLTGAPKLIILAANAPKWARDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEILK 96
BLAST of CK938947 vs. ExPASy Swiss-Prot
Match: RL30E_METJA (50S ribosomal protein L30e OS=Methanocaldococcus jannaschii GN=rpl30e PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11 Identity = 29/93 (31.18%), Postives = 58/93 (62.37%), Query Frame = 1 Query: 124 INNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 402 +N + + +GK LG K ++ ++ +GKL++L+ N P + +++YYA L+ + V+ + +++LG CGK F V+ L ++D G S+I++ Sbjct: 9 VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNIME 101 The following BLAST results are available for this feature:
BLAST of CK938947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938947 ID=CK938947; Name=CK938947; organism=Citrus sinensis; type=EST; length=578bpback to top |