CK938935

Overview
NameCK938935
Unique NameCK938935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938935_ssr104 microsatellite CK938935_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALG2 (Flavoprotein wrbA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALEP (Flavoprotein wrbA OS=Salmonella enteritidis PT4 (strain P125109) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALDC (Flavoprotein wrbA OS=Salmonella dublin (strain CT_02021853) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALAR (Flavoprotein wrbA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALA4 (Flavoprotein wrbA OS=Salmonella agona (strain SL483) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_KLEP3 (Flavoprotein wrbA OS=Klebsiella pneumoniae (strain 342) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  305 AGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            A +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F++++V+GG+ YGA T A  DGSRQP++ EL  A +QG++VA++A K+
Sbjct:  108 ASVFSSTGT-GGGQEQTITSTWTTLAHHGMIIVPIGYG-AQELFDISQVRGGTPYGATTIAGGDGSRQPSEEELAIARYQGEHVAKLAVKV 196          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_DESMR (Flavoprotein wrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  302 PAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKLK 577
            P G+F ST    GGQE T ++ +  L HHGM+ V L Y+F +G   ++EV GGS YGA T A  DGSR P++ EL  A  QG+++A++ ++L+
Sbjct:  111 PGGVFCSTATQHGGQETTLMSFIQTLLHHGMIVVGLPYSF-AGQMRLDEVTGGSPYGATTIAGGDGSRMPSENELDAARFQGRHIADVTRRLR 202          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURCJ (Flavoprotein wrbA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  MNE+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELANKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_BURCC (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain MC0-3) GN=wrbA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG   GGQE T  +  T L HHGM+ V + Y   SG+  MNE+ GG+ YGA T A ADGSRQP+  EL  A +QGK+VAE+A KL
Sbjct:  111 VFASTGTQHGGQETTITSFHTTLLHHGMVIVGVPYAC-SGLVNMNEITGGTPYGATTLAGADGSRQPSANELDIARYQGKHVAELASKL 198          
BLAST of CK938935 vs. ExPASy Swiss-Prot
Match: WRBA_SALPB (Flavoprotein wrbA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=wrbA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 2
Query:  311 IFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFA-ADGSRQPTDLELQQAFHQGKYVAEIAKKL 574
            +F STG  GGGQE T  +  T LAHHGM+ VP+GY     +F+++ V+GG+ YGA T A  DGSRQP+  EL  A +QG+YVA +A KL
Sbjct:  110 VFSSTGT-GGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSHVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
The following BLAST results are available for this feature:
BLAST of CK938935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
WRBA_SALG25.155e-1652.81Flavoprotein wrbA OS=Salmonella gallinarum (strain... [more]
WRBA_SALEP5.155e-1652.81Flavoprotein wrbA OS=Salmonella enteritidis PT4 (s... [more]
WRBA_SALDC5.155e-1652.81Flavoprotein wrbA OS=Salmonella dublin (strain CT_... [more]
WRBA_SALAR5.155e-1652.81Flavoprotein wrbA OS=Salmonella arizonae (strain A... [more]
WRBA_SALA45.155e-1652.81Flavoprotein wrbA OS=Salmonella agona (strain SL48... [more]
WRBA_KLEP36.733e-1650.55Flavoprotein wrbA OS=Klebsiella pneumoniae (strain... [more]
WRBA_DESMR6.733e-1645.16Flavoprotein wrbA OS=Desulfovibrio magneticus (str... [more]
WRBA_BURCJ6.733e-1653.93Flavoprotein wrbA OS=Burkholderia cepacia (strain ... [more]
WRBA_BURCC6.733e-1653.93Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_SALPB8.793e-1652.81Flavoprotein wrbA OS=Salmonella paratyphi B (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004436_D05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938935 ID=CK938935; Name=CK938935; organism=Citrus sinensis; type=EST; length=705bp
GGGTGCTTAAGAGGAAAGGAAAATTCTTGGGTGTTCCGAATGCATTGCTC
TTTTTCCAGTTATTTCTTGCCGTGTGTATGCTTCAACCAATCATTATGAT
ATGCACACACACACGGCAAATTTGTGAATGGATAATGAAAAATGCTCTAG
GAGCGCCAAAGACCTTAGGAGGCCATTTGATGATGCAAAATTTTCCTTGA
CTTGATTGGAATACATAGGTACCTGAGACACTTTCCAGTGTGATTTTGCA
AAAGATGAAAGCTCCTCCTAAAACAAATGACGTGCCAGTGATCAGGCCCC
ACCTGCTGGAATCTTCTGGAGTACTGGTTTTCATGGGGGAGGCCAGGAGC
TTACTGCATTGACTGCCGTAACACAACTAGCACATCATGGTATGCTGTTT
GTTCCACTTGGTTACACCTTTGGCAGCGGCATGTTTGAGATGAATGAGGT
GAAGGGTGGCTCTTCTTATGGCGCTGGAACATTTGCAGCAGATGGTTCCC
GCCAACCCACAGATCTAGAACTCCAACAGGCCTTTCACCAGGGAAAGTAT
GTTGCTGAAATAGCAAAGAAGCTCAAACGTTGATCTTAAGAAATTCTTGT
ACATGATGTATCTGATAGTGTGAAGAAATACTCAACTGTAATTTATCAAG
GAAAACCTATGAAATAAAATCTTCTACTCAAAAAAAAAAAAAAAAAAAAA
AAAAA
back to top