CK938927

Overview
NameCK938927
Unique NameCK938927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938927_ssr381 microsatellite CK938927_ssr381:381..398. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:537..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.459e-23
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 271
            FTI G +YF LVL+TN+ G+G + ++S+KGS TGW  MSRNWG NWQ    L GQ+LSF VT++ G+T+   +V PA WSFG+T+S  Q
Sbjct:  157 FTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.130e-23
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 277
            FTINGH YFNLVL+TNV   G + ++ + GS  T W PM RNWG NW S +YL GQ LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  188 FTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 280          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.130e-23
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 262
            FTING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  157 FTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.216e-22
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 277
            FTINGH YF LVL+TNV  AG + ++ + GS T  W PM+RNWG  W S  YL GQ LSF+VT +D +T+   NV P  W FG+T+ S  QF+
Sbjct:  175 FTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQFK 267          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 262
            FT+ G  +F LVL+ NV G+G V AVS++G+ TGW  MSRNWG NWQS   L GQ LSF VTT+ G+ +   +VAPA W FG+T+S
Sbjct:  163 FTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 262
            F ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  148 FIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.621e-22
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 277
            FTINGH YF LVL+TNVG AG + A+ +KGS++  W  M+ NWG  W S  YL GQ LSF+VT +DG+T+   NV    W FG+T+ S  QF+
Sbjct:  170 FTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQFK 262          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.036e-22
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 271
            FT+ G +YF LVLITNV G+G V +  IKG+ TGW  MSRNWG NWQS   L GQ+LSF VTT+ G+ +   +VAPA W FG+T+S  Q
Sbjct:  164 FTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQ 252          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS--GAQF 274
            FT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RNWG NWQS+  L GQ LSFKVT +D +T T  NV P+SW FG+T+S  G QF
Sbjct:  159 FTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of CK938927 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.294e-21
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    5 FTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 265
            F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF+VTTSDG T    NV P +W FG+T+ G
Sbjct:  186 FETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
The following BLAST results are available for this feature:
BLAST of CK938927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP18_ORYSJ5.459e-2355.06Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ7.130e-2353.76Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ7.130e-2354.65Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.216e-2252.69Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ3.539e-2255.81Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP20_ORYSJ4.621e-2253.49Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ4.621e-2252.69Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ6.036e-2257.30Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH1.345e-2153.76Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP25_ARATH2.294e-2150.57Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938927 ID=CK938927; Name=CK938927; organism=Citrus sinensis; type=EST; length=806bp
GGGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCA
ACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGA
ACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAA
CACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATG
GCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTGGC
CGAACTTACTCCGGTGCTCAATTCCGCTAGGGCCACCAAGACCATTAGAG
ATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGTAT
ATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATAAT
ATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAA
AAAAGGGGCTTATTTTAAAATGGCTTATTTTTTTTCATTTTGAATTGATT
TTTATGGTTGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCTTGGG
GATCCTTTTTTTACCTTTCTTTTTGGGGGTTTCTGTTGAAGTGCAACAGA
TGGCTGAGGTGGAAATTTTTCCACCCGCCATTTGTGTTTGAAATAGCTGC
TTCTCTTTTTTTGATGCTTCTTGGAATTGCTTGCCCAGAAGCACTTTTTG
GAGTGCAAGTTTAATTGTAATCAGCAGATTTGGCTGAGTATTATGTCGTT
GGATGTAATGGCTAAATTTGTACGAGATTGGAGGTGTAAATTTCCATTTC
ATTTTA
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