CK938916

Overview
NameCK938916
Unique NameCK938916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAA 341
            +KT LC +S  KIYP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +Y                        R+IVGA+LEVIQ++R +KPEV+ AA E A
Sbjct:    1 MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKKVERNIVGASLEVIQQKRAQKPEVKQAAAEQA 108          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAARE 335
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT +Y                        R+IVGA+LE+I++RR+ KPEVR A R+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKAQRAIVGASLELIKERRSLKPEVRKAKRD 106          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_DANRE (60S ribosomal protein L24 OS=Danio rerio GN=rpl24 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F ++  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAI 109          
BLAST of CK938916 vs. ExPASy Swiss-Prot
Match: RL24_PAGMA (60S ribosomal protein L24 OS=Pagrus major GN=rpl24 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   42 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMY--------XXXXXXXXXXXXXPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 344
            +K ELC FSG KIYPG G R+ R D +VF F N+KC+  F  +  P ++ WT +Y                      + R+I GA+L  I  +R +KPEVR A RE A+
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAI 109          
The following BLAST results are available for this feature:
BLAST of CK938916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL24_RAT8.575e-1639.4560S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE8.575e-1639.4560S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA8.575e-1639.4560S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN8.575e-1639.4560S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA8.575e-1639.4560S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN8.575e-1639.4560S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]
RL24_DICDI1.463e-1538.8960S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_CANGA1.463e-1541.5160S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24_DANRE2.495e-1539.4560S ribosomal protein L24 OS=Danio rerio GN=rpl24 ... [more]
RL24_PAGMA3.259e-1539.4560S ribosomal protein L24 OS=Pagrus major GN=rpl24... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004436_F06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938916 ID=CK938916; Name=CK938916; organism=Citrus sinensis; type=EST; length=695bp
GGGGGAAGCCGCATCCAGCAACACCATCAGAAACCATGGTTCTCAAGACT
GAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAG
ATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCA
AGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGACAGCC
ATGTACAGGAAACAGCACAAGAAGAAGCGTCGTGCCACTAAGAAGCCCTA
TTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCAGAAGAGAAGAA
CTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTGCACTTCGTGAA
ATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAGGCAAAGAAAGC
GGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAGTAGCGTGCCTA
AGGGTGCCGCCCCGAAGGGCCCCAAGCTAGGCGGTGGTGGTGGAAAGCGG
TGAATTGCTTAGTCTTTTCAAATCTGCAGATGAGTATAAACAATTAGAAC
TTAATTTCATGTTTCTTGTATGGATTGATCAATCATGTAGACCAGATTTT
TTTGTGGTTTTTGTTTATGGTTTTGCATTGGGAGTTAATTTGCCTTTTAC
TTAATTGAATCAAAGTTTTCTCAGAAAAAAAAAAAAAAAAAAAAA
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